Submitted SNP(ss) Details: ss5777894

Submitted SNP(ss) Details: ss5777894

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004350.12_216542
RefSNP(rs#)	rs6682385
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004350.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	5
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:P1_1B408A11.P1CSCFPOSITION:477QUALITY:29SEQUENCE:P1_1B479C02.P1CSCFPOSITION:452QUALITY:46SEQUENCE:P1_3A425H08.Q1CSCFPOSITION:443QUALITY:23SEQUENCE:P1_1A595B06.Q1CSCFPOSITION:433QUALITY:29

Fasta sequence (Legend)

 TGTGGCTGCT GCGGTGGCGG CAGAGGAGGG ATGGAGTCTG ACACGCGGGC AAAGGCTCCT
 CCGGGCCCCT CACCAGCCCC AGGTCCTTTC CCAGAGATGC CTGGAGGGAA AAGGCTGAGT
 GAGGGTGGTT GGTGGGAAAC CCTGGTTCCC CCAGCCCCCG GAGACTTAAA TACAGGAAGA
 AAAAGGCAGG ACAGAATTAC
 R
 AGGTGCTGGC CCAGGGCGGG CAGCGGCCCT GCCTCCTACC CTTGCGCCTC ATGACCAGCT
 TGTTGAAGAG ATCCGACATC AAGTGCCCAC CTTGGCTCGT GGCTCTCACT GCAACGGGAA
 AGCCACAGAC TGGGGTGAAG AGTTCAGTCA CATGCGACCG GTGACTCCCT GTCCCCACCC
 CCATGACACT CCCCAGCCCT

Submitted Frequency for ss5777894

There is no frequency submission for ss5777894.

dbSNP summary of Genotypes for ss5777894

No sufficient data to compute Hardy-weinberg probability for ss5777894.

Submitted individual genotype for ss5777894

There is no individual genotype data for ss5777894.

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