Submitted SNP(ss) Details: ss5792043

Submitted SNP(ss) Details: ss5792043

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_009799.10_10206619
RefSNP(rs#)	rs1185049
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_009799.10
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	5
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:XBI57C02.B9POSITION:160QUALITY:45SEQUENCE:XBI57C02.B7POSITION:165QUALITY:37SEQUENCE:XBI96C05.B1POSITION:166QUALITY:39SEQUENCE:XBI57C02.B8POSITION:163QUALITY:42

Fasta sequence (Legend)

 CCCATCCTTC TTGAGAACCT CTCAGCACAT GGATACCTAC TGTAGTAAAT AAATTAGACC
 AAGTGCTAAT GGTGTCCTGG AGCTAATTTC ACCCAGTTCC CACCACCACA CCTTTCACAC
 AGAGAAGCAT AGTTTGATGA GCCCACTTAC TCTGGAGATG GGGAGAATCA CTTCAAAAGC
 AGGTAACAGT GGAGGGGGGC
 R
 GGCTACTAGC TGAAAGGCTA TTACGATGTT CCTAATGAAA GATGACAGCT CCAGAAAGAT
 GGTGAATGGA GTTTATAGTC TAATAAGGAG AAGCACATGT GAAAACAAGA GGTACAACAG
 TGTGTTACTG CTGGTGAGAT ACAATTACTC ATATGTATGC ATAAACAATG AGGCATAAAG
 AGTCTATTTT CCCCAAGCAG

Submitted Frequency for ss5792043

There is no frequency submission for ss5792043.

dbSNP summary of Genotypes for ss5792043

No sufficient data to compute Hardy-weinberg probability for ss5792043.

Submitted individual genotype for ss5792043

There is no individual genotype data for ss5792043.

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