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Submitted SNP(ss) Details: ss5867440           
Submitter
HandleSC_JCM
Submitter SNP IDNT_028050.9_892940
RefSNP(rs#)rs1339866
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:S148P6420441FG10.T0.SCFPOSITION:554QUALITY:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5867440|allelePos=201|len=401|taxid=9606|alleles='A/C'|mol=Genomic
 CATGTCTTGA CATCTTTGTG GAGGTCATCA TCTTTCATCA GCCCACCTGA TGTCCCCACA
 TGGGGGAGGC CTCATTATGC AGCAGCCCTG CCATTTTAAA ATTATGAATT ATGTACAAAT
 TACATAGATT TCACAAGTCT TCCAGTGCTA TGAAATTAGG GATAACAAAC CTTTTTCTGG
 GAGGTGTTTT GCTTCTAGAG
 M
 CCAAATTATT AAGCAAACTT AATCAAATCT TTGGCAGTTT TTGTGCATCA TTTTCCTCTT
 CTTCTGAAAT AGAAACAAta gaagtcctag atggagcaat caggcaagac aaagaaataa
 aagcacccaa attgcaaaag aggaaatcaa actatcactg tatgccagtg atgtgatcat
 atacctagaa aagcctaaaC

  Submitted Frequency for ss5867440 back to top
There is no frequency submission for ss5867440.


  dbSNP summary of Genotypes for ss5867440 back to top
No sufficient data to compute Hardy-weinberg probability for ss5867440.


  Submitted individual genotype for ss5867440 back to top
There is no individual genotype data for ss5867440.

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