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Submitted SNP(ss) Details: ss5883567           
Submitter
HandleSC_JCM
Submitter SNP IDNT_004350.12_255655
RefSNP(rs#)rs2531228
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:JAD26H04.G2POSITION:232QUALITY:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5883567|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AGCCCTGAAC TGAGATTTGA CTTTACCTTG AGCTTTGTCA GTTTACGATG CTATTTCAGT
 TTTGTGCTCA GATTTGAGTG ATTGCAGGAA GAGAATAAAT TTCTTTAATG CTGTCAAGAC
 TTTAAATAGA TACAGACAGA GCATTTTCAC TTTTTCCTAC ATCTCTATTA TTCTAAAAAT
 GAGAACATTC CAAAAGTCAA
 Y
 CATCCAAGTT TATTCTAAAT AGATGTGTAG AAATAACAGT TGTTTCACAG GAGACTAATC
 GCCCAAGGAT ATGTGTTTAG AGGTACTGGT TTCTTAAATA AGGTTTTCTA GTCAGGCAAA
 AGATTCCCTG GAGCTTATGC ATCTGTGGTT GATATTTTGG GATAAGAATA AAGCTAGAAA
 TGGTGAGGCA TATTCAATTT

  Submitted Frequency for ss5883567 back to top
There is no frequency submission for ss5883567.


  dbSNP summary of Genotypes for ss5883567 back to top
No sufficient data to compute Hardy-weinberg probability for ss5883567.


  Submitted individual genotype for ss5883567 back to top
There is no individual genotype data for ss5883567.