Submitted SNP(ss) Details: ss5886371

Submitted SNP(ss) Details: ss5886371

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_026943.9_169460
RefSNP(rs#)	rs4403648
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_026943.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/!t_g

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:JAH42B11.B1POSITION:-384QUALITY:35

Fasta sequence (Legend)

 TTAATCTTAA AGAAGACCAG CAGTAATAAC CTATCTCTTC CCATTTCAGA CTCAACATAA
 CCAATACCTG CCTTTCAAGG AAAACTCATA TGGGGCTCAC TGATGAAACA AAGCGAGTTT
 GCAAAAAAAG ATTCGACATA GTCAATTCTT TGTACTCTTC AGTGATGGTA GCTGCCTTAG
 TGGAAAATGT GGAAAATTAC
 M
 GATTGGGGTA GGTGAATTGA AGATAAAATT ATTTATTTTT GTTGTTATAA ACACAAATTT
 TGATATAATA TAGCATCATG TGTAAAATAA TTTTCCTAAC TAACTTAAGA AATATGTGGA
 ACAGAAATAT TTGAAATGTG GTGGTGTACA AGGAAGTGAG CTTGAAGAAA AGAGGGTCCC
 AAAAATTCAT GTTTTACACC

Submitted Frequency for ss5886371

There is no frequency submission for ss5886371.

dbSNP summary of Genotypes for ss5886371

No sufficient data to compute Hardy-weinberg probability for ss5886371.

Submitted individual genotype for ss5886371

There is no individual genotype data for ss5886371.

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