Submitted SNP(ss) Details: ss5934852

Submitted SNP(ss) Details: ss5934852

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004858.12_661424
RefSNP(rs#)	rs3926124
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004858.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	G:Germline A:Germline
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:DIE05B03.B1POSITION:395QUALITY:46

Fasta sequence (Legend)

 GGCTCTCCTT GCCTGCTTAC TTTCGTCCTG CCTTTCCCCT GCCCAGGGGT GTGGGGTACG
 GATACAGAGG AGCGGCTGGT GGAGCATCTC CTGGATCCTT CCCGCTACAA CAAGCTTATC
 CGCCCAGCCA CCAATGGCTC TGAGCTGGTG ACAGTACAGC TTATGGTGTC ACTGGCCCAG
 CTCATCAGTG TGGTGAGTAG
 R
 GGTCCCAGGC TCTCTGCCCA GCTACTGAAA TCAGCCCCGC CAAAATGTGT TAATGCTTGT
 GTGCTTCCTC CCCTGGTGTT TCCAAGGCTT GGGGAGGTGT GAGAGGGACC CTGGGTGGTG
 GCAGTGACCC CACAGGCTTA GGGGCCTTCT CGGCAGCCTC TCTTCCTCCC TGCAGCATGA
 GCGGGAGCAG ATCATGACCA

Submitted Frequency for ss5934852

There is no frequency submission for ss5934852.

dbSNP summary of Genotypes for ss5934852

No sufficient data to compute Hardy-weinberg probability for ss5934852.

Submitted individual genotype for ss5934852

There is no individual genotype data for ss5934852.

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