NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5974197           
Submitter
HandleSC_JCM
Submitter SNP IDNT_011512.6_49651
RefSNP(rs#)rs2821574
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:XBJ21E07.B1POSITION:-173QUALITY:45SEQUENCE:XBL85G02.B1POSITION:-182QUALITY:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5974197|allelePos=201|len=401|taxid=9606|alleles='A/T'|mol=Genomic
 cttgaaccca ggaggcagag gttgcagtga gccaagatca catcactgca ctcatcttgg
 gcaacagagt gagacttcat ctcaaaaaaa aaaaaaaTCT TGATTCCTTT ATCCCCTGTG
 CTTCACAGCA TTCAGAGTCT TCCATATTTT CTGGGAGTTT CTTGGTTAGT TGGGCTTGGC
 CTCTCCTCAC TTACTGTTGG
 W
 GCCTGCCCTC TTCTCTGTGC TCCAGAGCAG ATCATGTTTT CTCTACTCAG TTCCCTCTAG
 TGAGGAGACT CATTCCACTT TCACCCCCAC CTTAGCACCA AGCACCATTA ATTCAAGACC
 ACTATGTGGA GGAGATAAGG GAGAATTACA TCCCACGAAG AGCAGCAAAA TGCATAAACA
 TGCATATATA TACACACATA

  Submitted Frequency for ss5974197 back to top
There is no frequency submission for ss5974197.


  dbSNP summary of Genotypes for ss5974197 back to top
No sufficient data to compute Hardy-weinberg probability for ss5974197.


  Submitted individual genotype for ss5974197 back to top
There is no individual genotype data for ss5974197.