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Submitted SNP(ss) Details: ss5989569           
Submitter
HandleSC_JCM
Submitter SNP IDNT_009799.10_10181173
RefSNP(rs#)rs1771178
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:JBQ94F11.G1POSITION:311QUALITY:41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5989569|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CTAAACAGTC AAAAATGTGT CCTGCCACAG GTGAGGCCTG GAGCTAGGAA GGGGTATGTG
 CTCAATGGTT TTATGTGTGC ACGGGGCTGG GGATGAGGCA GTGAAGGTGA AGGCTCATAG
 CTTTCTGCTC ACAATCCTCC AGGCCATGTG ACATCCACGC AGATGAGGGC ATTCAGCACC
 ATTTCCTTGC ATTGAATATT
 R
 AAGAATAGCT AATCATTCCC TAAGATCATT TTGAAGGTAA CAGCAATAAT AATGTCCTTG
 TGAATGTCAT GTTATGCCCT GCACTTCACA CACACTTTCT CATTCAGTGC TTCTCCACAC
 CGTAGGAGGA GGTATGAAAA GCCCCCTTTT ACAGATTAGG AGTGTCTGTG GGCAGTGTAT
 AAAAATGTAA GTGGAGACTT

  Submitted Frequency for ss5989569 back to top
There is no frequency submission for ss5989569.


  dbSNP summary of Genotypes for ss5989569 back to top
No sufficient data to compute Hardy-weinberg probability for ss5989569.


  Submitted individual genotype for ss5989569 back to top
There is no individual genotype data for ss5989569.

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