Submitted SNP(ss) Details: ss6010545

Submitted SNP(ss) Details: ss6010545

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004350.12_216519
RefSNP(rs#)	rs6682375
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004350.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	3
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:P1_1B479C02.P1CSCFPOSITION:429QUALITY:37SEQUENCE:P1_1A388C10.Q1CSCFPOSITION:412QUALITY:29

Fasta sequence (Legend)

 AGTCGTCCTC GTCCTCCTCT GCCTGTGGCT GCTGCGGTGG CGGCAGAGGA GGGATGGAGT
 CTGACACGCG GGCAAAGGCT CCTCCGGGCC CCTCACCAGC CCCAGGTCCT TTCCCAGAGA
 TGCCTGGAGG GAAAAGGCTG AGTGAGGGTG GTTGGTGGGA AACCCTGGTT CCCCCAGCCC
 CCGGAGACTT AAATACAGGA
 R
 GAAAAAGGCA GGACAGAATT ACAAGGTGCT GGCCCAGGGC GGGCAGCGGC CCTGCCTCCT
 ACCCTTGCGC CTCATGACCA GCTTGTTGAA GAGATCCGAC ATCAAGTGCC CACCTTGGCT
 CGTGGCTCTC ACTGCAACGG GAAAGCCACA GACTGGGGTG AAGAGTTCAG TCACATGCGA
 CCGGTGACTC CCTGTCCCCA

Submitted Frequency for ss6010545

There is no frequency submission for ss6010545.

dbSNP summary of Genotypes for ss6010545

No sufficient data to compute Hardy-weinberg probability for ss6010545.

Submitted individual genotype for ss6010545

There is no individual genotype data for ss6010545.

Disclaimer Privacy statement