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Submitted SNP(ss) Details: ss6040318           
Submitter
HandleSC_JCM
Submitter SNP IDNT_004350.12_161550
RefSNP(rs#)rs1048488
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:P4_2A1053B07.Q1CSCFPOSITION:135QUALITY:34SEQUENCE:P4_2A655H06.Q1CSCFPOSITION:136QUALITY:32

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6040318|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 ATTTTTGTTC TCTGAGCTTC TTTCTTAGGG AAGATCCTTC TTGAGAAGCC CCTGCTGAGT
 ATTAGGAAAA TGCATTTCAG GACCTCTCAT CAACACATCC TCTTTCTTTA CCACAACCAC
 ATATATGGGG GCATAACTCA ACATGTGTAA AAGACAATCT TCTGCTTTTC ACTGAACCTC
 CAGGAATTCA GGACAATAAA
 Y
 GTCTACATGG AGACCAACAG GTGAGTTTTT CTGCCCCTTC TTTCATAACA CCGTTCTTCC
 CTAGTGAAGT CCACACACAT CCTTACATGG CAGCTGTGGG TATATCAACT GGTCTGACCC
 CTTTTAGTCA CAGAGCCTGA AGTCTCTGCT AGTACCTGCT GAGCACAGGG TCATGGGTGA
 GAATGGGCAA GTCTTTTTCT

  Submitted Frequency for ss6040318 back to top
There is no frequency submission for ss6040318.


  dbSNP summary of Genotypes for ss6040318 back to top
No sufficient data to compute Hardy-weinberg probability for ss6040318.


  Submitted individual genotype for ss6040318 back to top
There is no individual genotype data for ss6040318.