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Submitted SNP(ss) Details: ss61705810           
Submitter
HandleSI_EXO
Submitter SNP IDNT_030059.12_8475930
RefSNP(rs#)rs11202607
Submitted Batch IDSI_EXO_20060629
Submitted DateJul 11, 2006
Publication Cited[1] A SNP-survey of human exons in 48 CEPH samples
First entry to dbSNPJul 11 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSI_EXOSEQ_1
Ascertainment Samplesize45
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
ExoSeq_class:MHe2Estimated_frequency:.07Minor_allele:T

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss61705810|allelePos=401|len=801|taxid=9606|alleles='C/T'|mol=Genomic
 TACAAATACA GATTGAATAG GACCTACTAG AGCAGCATTT ATAGAGTTTG ATGGCAAATA
 GATTAGGCAG AACTTCATCT AAAATATTCT TAGTAAATAA TGTTGACACG TTTTCCATAC
 CTTGTCAGTT TCATTCAACA ATTTTTAAAT TTTTAACAAA GCTCTTAGGA TTTACACATT
 TATATTTAAA CATTGATATA TAGAGTATTG ATTGATTGCT CATAAGTTAA ATTGGTAAAG
 TTAGAGACAA CTATTCTAAC ACCTCACCAT TGAAATTTAT ATGCCACCTT GTCTTTCATA
 AAAGCTGAAA ATTGTTACCT AAAATGAAAA TCAACTTCAT GTTTTGAAGA TAGTTATAAA
 TATTGTTCTT TGTTACAATT TCGGGCACCG CATATTAAAA
 Y
 GTAACTTTAT TGTTCCAATA TGTAACATGG AGGGCCAGGT CATAAATAAT GACATTATAA
 TGGGCTTTTG CACTGTTATT ATTTTTCCTT TGGAATGTGA AGGTCTGAAT GAGGGTTTTG
 ATTTTGAATG TTTCAATGTT TTTGAGAAGC CTTGCTTACA TTTTATGGTG TAGTCATTGG
 AAATGGAAAA ATGGCATTAT ATATATTATA TATATAAATA TATATTATAC ATACTCTCCT
 TACTTTATTT CAGTTACCAT CCCCATAGAA TTTGACAAGA ATTGCTATGA CTGAAAGGTT
 TTCGAGTCCT AATTAAAACT TTATTTATGG CAGTATTCAT AATTAGCCTG AAATGCATTC
 TGTAGGTAAT CTCTGAGTTT CTGGAATATT TTCTTAGACT

  Submitted Frequency for ss61705810 back to top
There is no frequency submission for ss61705810.


  dbSNP summary of Genotypes for ss61705810 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.93805307
T=0.06194690C/C=0.87610620
C/T=0.12389380
Pr(chiSq=0.059,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.90697676
T=0.09302326C/C=0.81395346
C/T=0.18604651
Pr(chiSq=0.080,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172C=0.92441863
T=0.07558139C/C=0.86046511
C/T=0.12790698
T/T=0.01162791
Pr(chiSq=0.616,df=1)
=0.439
Genotype
Freq.
HapMap-YRI224224C=0.97321427
T=0.02678571C/C=0.94642860
C/T=0.05357143
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898C=0.95918369
T=0.04081633C/C=0.91836733
C/T=0.08163265
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282C=0.91463417
T=0.08536585C/C=0.82926828
C/T=0.17073171
Pr(chiSq=0.058,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170C=0.88823527
T=0.11176471C/C=0.81176472
C/T=0.15294118
T/T=0.03529412
Pr(chiSq=4.485,df=1)
=0.050
Genotype
Freq.
HAPMAP-GIH176176C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.95555556
T=0.04444445C/C=0.91111112
C/T=0.08888889
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100C=0.83999997
T=0.16000000C/C=0.69999999
C/T=0.28000000
T/T=0.02000000
Pr(chiSq=0.087,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK284284C=0.84154928
T=0.15845071C/C=0.71126759
C/T=0.26056337
T/T=0.02816901
Pr(chiSq=0.075,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI174174C=0.91954023
T=0.08045977C/C=0.85057473
C/T=0.13793103
T/T=0.01149425
Pr(chiSq=0.401,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss61705810 back to top
There is no individual genotype data for ss61705810.