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Submitted SNP(ss) Details: ss622           
Submitter
HandleKWOK
Submitter SNP IDXq3813-2
RefSNP(rs#)rs617
Submitted Batch ID1-20-99A
Submitted DateJan 23, 1999
Publication Cited[1] Efficient approach to unique single nucleotide polymorphism discovery.
[2] High Density Genetic Map of Xq25-Xq28.
First entry to dbSNPJan 23 1999 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
Method5
Ascertainment SamplesizeN.D.
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
In Expressed Sequence
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss622|allelePos=884|len=1260|taxid=9606|alleles='A/G'|mol=Genomic
 aggggccatg agccaaggaa ggtggatggc ctctagaaag tggaaaagtc aagaacactg
 attctttcct agagcctcca ggaaagaatt cagccatgcc gataccctga ttttaaccta
 tcaagaccca cttcaggctt ctgacccctg gatctctaag ataagtctgt gttgttttat
 gctgtcaatt ttgtggtaat ttattacaac agcaatggca aactagtaca CTGAGGTTTA
 CTCAGTACGG AAAATGTAAG GAGTAGTCTC TAGTTGTTGA TCATGATTAC TGAAAGGCAT
 TCTTCATGCT GAAATTGGTG CACAGGGTTA TTTACCTAGT GACCATTTTT TCTAGATATC
 CATATCAGGT CCCTCCATCA GAACTACAGC GATTGCTGAG GTCCCTGAAA AACCTGGCAA
 TTCTATCACT GCCACTCCCA ATTTCAGAGA GAATTCAGTC CTCCTTCCCT CTCCTTCTGT
 GGACCACTTG TGCTCCCTCC TCCTATCCCC TTGTCCCATA TCCCTCCACA TTGATACCTA
 GGATACAAGG TTTGTTGATA AGTGAGAAGT AAAAAATTAT CTTTTTTTCT TTCATGGGAC
 ACCCGCAGCA GGAAGAATGA TATAGGCACT AATATCCTAA CAAGTTACCC TGGCATGGGT
 TTCATGACAA TCTAGGTGTT GGGTATTAAG TAGAGTGTGA AATTGAAGTT TCAAGCTAGT
 GGCCGATTGC TCAGGGCCAG TCCTCAGATA CGTTTGTTTG CAACCCAGAA TGATTTCTCT
 CCTCTCTTCT CCTTTTCTTC CTTTTTAAAA ATGCTGTAGC TTGAGTGTGT CCTCTTTAAT
 TCTGTAGTAG AGGGTAAGTG CATATGCTTT GGGGTTTAAA ACC
 R
 AGAGAAGATc caattcggcc acatattgac tgtacagctt gggcaagtag attaagaata
 atctctctaa atctcaatct cctaacctct aagatgagaa taataattat acctcacaga
 gttgtgatgt tgaaaatggc atgcaaataa ttcataaaac accttgcaca atgcctggca
 tataacatag tgtatgctcg ataaatatta gctattactT CTGCCACTAT TCTTGCTATA
 GTAAGAGCAC AAAGGATGGG CAAACAATTT CATCTGGTAG GGGGGAATGA GAAGCAGATA
 TCTGGAAACG CTTCGTGGAG GAGGTAATGC CGGTAATACT AGGACCAGGC ATGTGAGTGT
 GGACTGCTGG GGAATA

  Submitted Frequency for ss622 back to top
There is no frequency submission for ss622.


  dbSNP summary of Genotypes for ss622 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224G=0.59821427
A=0.40178570G/G=0.48214287
A/A=0.28571430
A/G=0.23214285
Pr(chiSq=29.946,df=1)
=0.001
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.51162791
G=0.48837209A/A=0.37209302
G/G=0.34883720
A/G=0.27906978
Pr(chiSq=8.384,df=1)
=0.005
Genotype
Freq.
HapMap-JPT172172A=0.53488374
G=0.46511629A/A=0.40697673
G/G=0.33720931
A/G=0.25581396
Pr(chiSq=20.302,df=1)
=0.001
Genotype
Freq.
HapMap-YRI222278A=0.54954952
G=0.45045045A/A=0.41726619
G/G=0.35251799
A/G=0.23021583
Pr(chiSq=41.146,df=1)
=0.001
Genotype
Freq.
HAPMAP-ASW98106A=0.54081631
G=0.45918366A/A=0.39622641
G/G=0.30188680
A/G=0.30188680
Pr(chiSq=8.082,df=1)
=0.005
Genotype
Freq.
HAPMAP-CHB8282G=0.52439022
A=0.47560975G/G=0.39024389
A/A=0.34146342
A/G=0.26829270
Pr(chiSq=8.756,df=1)
=0.005
Genotype
Freq.
HAPMAP-CHD170170A=0.62352943
G=0.37647060A/A=0.48235294
A/G=0.28235295
G/G=0.23529412
Pr(chiSq=13.504,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176G=0.54545456
A=0.45454547G/G=0.43181819
A/A=0.34090909
A/G=0.22727273
Pr(chiSq=25.819,df=1)
=0.001
Genotype
Freq.
HAPMAP-LWK178178A=0.57303369
G=0.42696628A/A=0.41573033
A/G=0.31460676
G/G=0.26966292
Pr(chiSq=11.347,df=1)
=0.001
Genotype
Freq.
HAPMAP-MEX100154G=0.64999998
A=0.34999999G/G=0.51948053
A/G=0.29870129
A/A=0.18181819
Pr(chiSq=8.060,df=1)
=0.005
Genotype
Freq.
HAPMAP-MKK284284A=0.62323946
G=0.37676057A/A=0.50000000
G/G=0.25352111
A/G=0.24647887
Pr(chiSq=32.060,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI172172A=0.53488374
G=0.46511629A/A=0.40697673
G/G=0.33720931
A/G=0.25581396
Pr(chiSq=20.302,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss622 back to top
There is no individual genotype data for ss622.

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