NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss6504548           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_007819.11_27240433
RefSNP(rs#)rs200
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P800657FB3.T0position:323quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6504548|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 TAAAAACTGA AGAGAAAGTT GCACTAAGGC TCTTAGAGTT TTAAATCCAG TATTCAGCTG
 GGAACACAGC CTGGTGGGTG AAAAAATCTA GGTTCTGAAG GCAAACTCTT AATCTGAGTT
 AGTTGGTGTT CAAGCTTAGA AAATTAATGA CTCCTTCTCA TCTTGGGGTC CTCCTTATAA
 AACAGAGGTA ATCCTAACAC
 Y
 TACCTCATGG GGTTTATTAT CAACATCTCA TTGGATAAAT GCATGAAAAG CCCTTGGCTC
 CACATAATAC TCAATATATG TTAGGAGACC ACTCAGAGTT GTGGTATTTC CATGGGTGCT
 GGCCTTGTGC TCCTGACCCT TTCCCAGGAA GGAGAAATTG TTTATAAATT TAACTGCCAT
 CTAGGAGAAT TCTTACATAA

  Submitted Frequency for ss6504548 back to top
There is no frequency submission for ss6504548.


  dbSNP summary of Genotypes for ss6504548 back to top
No sufficient data to compute Hardy-weinberg probability for ss6504548.


  Submitted individual genotype for ss6504548 back to top
There is no individual genotype data for ss6504548.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement