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Submitted SNP(ss) Details: ss6649642           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_011512.7_46785
RefSNP(rs#)rs2821572
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P802236RF10.T0position:180quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6649642|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GGAAATTCAA GATATTCCTA ACACAGAAAT ATTCTTAGCT GAAAAGAGTA TGGGATGACA
 ATTTTCAACC TGGCATATAT AAAAAGAAGA AAAATGTTGG GTAAATGAAC AGCAAAAGAA
 AGATGACATT CATATGTCCT ATGCAATTCT GAATACTTAT TTTATGTAGG TGAATATTTT
 AATGAAAGAC ATTTATTGAT
 Y
 CAAAATATTT TTTAACTTAA CGAACTTTGG CAAAACAATG CCCTTCAGTC AGTGACTATA
 TTATCAAGTT TCACCTACCT CTGATCAAGG AAACAAAAAT AATAGTAATT CCATACTCAG
 TATGTGTGAG AAAATAAGAT GTGTTTAGTT CTAATTATTT TGAGTTATGC CACATAACAC
 ATAACAGTAT ACATTTATTT

  Submitted Frequency for ss6649642 back to top
There is no frequency submission for ss6649642.


  dbSNP summary of Genotypes for ss6649642 back to top
No sufficient data to compute Hardy-weinberg probability for ss6649642.


  Submitted individual genotype for ss6649642 back to top
There is no individual genotype data for ss6649642.

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