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Submitted SNP(ss) Details: ss6652899           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_011512.7_49651
RefSNP(rs#)rs2821574
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P80416FH10.T0position:436quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6652899|allelePos=201|len=401|taxid=9606|alleles='A/T'|mol=Genomic
 cttgaaccca ggaggcagag gttgcagtga gccaagatca catcactgca ctcatcttgg
 gcaacagagt gagacttcat ctcaaaaaaa aaaaaaaTCT TGATTCCTTT ATCCCCTGTG
 CTTCACAGCA TTCAGAGTCT TCCATATTTT CTGGGAGTTT CTTGGTTAGT TGGGCTTGGC
 CTCTCCTCAC TTACTGTTGG
 W
 GCCTGCCCTC TTCTCTGTGC TCCAGAGCAG ATCATGTTTT CTCTACTCAG TTCCCTCTAG
 TGAGGAGACT CATTCCACTT TCACCCCCAC CTTAGCACCA AGCACCATTA ATTCAAGACC
 ACTATGTGGA GGAGATAAGG GAGAATTACA TCCCACGAAG AGCAGCAAAA TGCATAAACA
 TGCATATATA TACACACATA

  Submitted Frequency for ss6652899 back to top
There is no frequency submission for ss6652899.


  dbSNP summary of Genotypes for ss6652899 back to top
No sufficient data to compute Hardy-weinberg probability for ss6652899.


  Submitted individual genotype for ss6652899 back to top
There is no individual genotype data for ss6652899.