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Submitted SNP(ss) Details: ss66856878           
Submitter
HandleEGP_SNPS
Submitter SNP IDTP53_014783
RefSNP(rs#)rs1625895
Submitted Batch IDTP53-JPT-041206
Submitted DateNov 09, 2006
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPNov 9 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-GENO-ILLUMINA
Ascertainment Samplesize90
PopulationJPT_GENO_PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss66856878|allelePos=101|len=201|taxid=9606|alleles='A/G'|mol=Genomic
 TTTCGRCATA GTGTGGTGGT GCCCTATGAG CCGCCTGAGG TCTGGTTTGC AACTGGGGTC
 TCTGGGAGGA GGGGTTAAGG GTGGTTRTCA GTGGCCCTCC
 R
 GGTGAGCAGT AGGGGGGCTT TCTCCTGCTG CTTATTTGAC CTCCCTATAA CCCCATGAGA
 TGTGCAAAGT AAATGGGTTT AACTATTGCA CAGTTGAAAA

  Submitted Frequency for ss66856878 back to top
There is no frequency submission for ss66856878.


  dbSNP summary of Genotypes for ss66856878 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HSP_GENO_PANEL116116G=0.91379309
A=0.08620690G/G=0.84482759
A/G=0.13793103
A/A=0.01724138
Pr(chiSq=0.899,df=1)
=0.371
Genotype
Freq.
CEU_GENO_PANEL118118G=0.90677965
A=0.09322034G/G=0.81355929
A/G=0.18644068
Pr(chiSq=0.111,df=1)
=0.752
Genotype
Freq.
AAM_GENO_PANEL124124G=0.78225809
A=0.21774194G/G=0.62903225
A/G=0.30645162
A/A=0.06451613
Pr(chiSq=0.625,df=1)
=0.439
Genotype
Freq.
CHB_GENO_PANEL8888G=0.96590906
A=0.03409091G/G=0.93181819
A/G=0.06818182
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
YRI_GENO_PANEL120120G=0.69999999
A=0.30000001G/G=0.51666665
A/G=0.36666667
A/A=0.11666667
Pr(chiSq=0.967,df=1)
=0.343
Genotype
Freq.

  Submitted individual genotype for ss66856878 back to top
There is no individual genotype data for ss66856878.

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