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Submitted SNP(ss) Details: ss68756333           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP00979111
RefSNP(rs#)rs17160669
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756333|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 AAATAATTTA CTTTTACAAT TAAGCTTAGG AATCACACAG ACTCAGGGCT
 GGCTCATGGC TTCC
 Y
 GGCAAGTTAA ACTC
 TGTACTTAGG CTCGGCGCGT ATGAAATGGC TAATTCTAAT CAGTGGTGCA

  Submitted Frequency for ss68756333 back to top
There is no frequency submission for ss68756333.


  dbSNP summary of Genotypes for ss68756333 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.82499999
T=0.17500000C/C=0.64999998
C/T=0.34999999
Pr(chiSq=0.862,df=1)
=0.371		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090T=0.86666667
C=0.13333334T/T=0.73333335
C/T=0.26666668
Pr(chiSq=0.265,df=1)
=0.655		Genotype
Freq.
HapMap-JPT9090T=0.72222221
C=0.27777779T/T=0.55555558
C/T=0.33333334
C/C=0.11111111
Pr(chiSq=1.289,df=1)
=0.273		Genotype
Freq.
HapMap-YRI120120C=0.73333335
T=0.26666668C/C=0.55000001
C/T=0.36666667
T/T=0.08333334
Pr(chiSq=0.234,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss68756333 back to top
There is no individual genotype data for ss68756333.

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