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Submitted SNP(ss) Details: ss68759907           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP04227374
RefSNP(rs#)rs3795322
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68759907|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 CTTTCGTGAG AGGCAGCAGA GTGCCTTGGA TGAGAGCAAC ACCTATCAGC
 TCCCAGACGG CTCC
 Y
 GCGTGGAGCT GACC
 CCCATGCAGC GGGTGGCTCC TGAGATGTTC TTTAGCCCGC AGGTGTTCGA

  Submitted Frequency for ss68759907 back to top
There is no frequency submission for ss68759907.


  dbSNP summary of Genotypes for ss68759907 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224C=0.98660713
T=0.01339286C/C=0.97321427
C/T=0.02678571
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484C=0.91666669
T=0.08333334C/C=0.83333331
C/T=0.16666667
Pr(chiSq=0.055,df=1)
=1.000
Genotype
Freq.
HapMap-JPT166166C=0.95783132
T=0.04216867C/C=0.91566265
C/T=0.08433735
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.99115044
T=0.00884956C/C=0.98230088
C/T=0.01769911
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898C=0.98979592
T=0.01020408C/C=0.97959185
C/T=0.02040816
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282C=0.96341461
T=0.03658536C/C=0.92682928
C/T=0.07317073
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170C=0.97058821
T=0.02941176C/C=0.95294118
C/T=0.03529412
T/T=0.01176471
Pr(chiSq=12.392,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH174174C=0.99425286
T=0.00574713C/C=0.98850572
C/T=0.01149425
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.99444443
T=0.00555556C/C=0.98888886
C/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9898C=0.97959185
T=0.02040816C/C=0.95918369
C/T=0.04081633
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI172172C=0.99418604
T=0.00581395C/C=0.98837209
C/T=0.01162791
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss68759907 back to top
There is no individual genotype data for ss68759907.