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Submitted SNP(ss) Details: ss68760856           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP00995445
RefSNP(rs#)rs522496
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68760856|allelePos=65|len=129|taxid=9606|alleles='T/C'|mol=Genomic
 TCCCTTCTCC ATGTTCCCAC CCGCTTGGGT CTCACCTCCC GGATCAGCTG
 CTTCTCGGCC TCCA
 Y
 GTCATGCTGG ATCA
 CAGGTTGGGG CAACAGCTTC TCCTCCACCT GCACAGGGTC TGGGGGCACC

  Submitted Frequency for ss68760856 back to top
There is no frequency submission for ss68760856.


  dbSNP summary of Genotypes for ss68760856 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.60000002
C=0.40000001C/T=0.56666666
T/T=0.31666666
C/C=0.11666667
Pr(chiSq=1.956,df=1)
=0.200		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090T=0.67777777
C=0.32222223T/T=0.46666667
C/T=0.42222223
C/C=0.11111111
Pr(chiSq=0.050,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090T=0.67777777
C=0.32222223T/T=0.48888889
C/T=0.37777779
C/C=0.13333334
Pr(chiSq=0.821,df=1)
=0.371		Genotype
Freq.
HapMap-YRI120120C=0.59166664
T=0.40833333C/T=0.55000001
C/C=0.31666666
T/T=0.13333334
Pr(chiSq=1.147,df=1)
=0.294		Genotype
Freq.

  Submitted individual genotype for ss68760856 back to top
There is no individual genotype data for ss68760856.

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