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Submitted SNP(ss) Details: ss68762699           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01004488
RefSNP(rs#)rs10753238
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68762699|allelePos=65|len=129|taxid=9606|alleles='G/A'|mol=Genomic
 GATTCCAGCT CTCCAAGTCC AATTCTGCCT CTCCTTGGGA TATTCCCTAA
 TGCCTGAGAT CACC
 R
 CCATGTCCTA TTAC
 CTCCTCCACT CTTTACCCTC AAGATGTTCA TTATCTGTCC TCTTGTTCCT

  Submitted Frequency for ss68762699 back to top
There is no frequency submission for ss68762699.


  dbSNP summary of Genotypes for ss68762699 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.55833334
G=0.44166666A/G=0.44999999
A/A=0.33333334
G/G=0.21666667
Pr(chiSq=0.460,df=1)
=0.527
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.77777779
G=0.22222222A/A=0.62222224
A/G=0.31111112
G/G=0.06666667
Pr(chiSq=0.450,df=1)
=0.527
Genotype
Freq.
HapMap-JPT9090A=0.89999998
G=0.10000000A/A=0.82222223
A/G=0.15555556
G/G=0.02222222
Pr(chiSq=0.830,df=1)
=0.371
Genotype
Freq.
HapMap-YRI120120A=0.75833333
G=0.24166666A/A=0.56666666
A/G=0.38333333
G/G=0.05000000
Pr(chiSq=0.126,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss68762699 back to top
There is no individual genotype data for ss68762699.