NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss68766388           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01034130
RefSNP(rs#)rs12021507
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68766388|allelePos=65|len=129|taxid=9606|alleles='G/C'|mol=Genomic
 AAAAATACAG GAGCTGCACC GCATAACCCA CAGAAAACTT TTGAGCTTTC
 TGAGTTTTTG AGAC
 S
 GACTTTGGGA ATCC
 ACTTTTCTAA GTTAGAAAGA AAATGTAAGC GTGCCTGTTT GTTGCTTAAA

  Submitted Frequency for ss68766388 back to top
There is no frequency submission for ss68766388.


  dbSNP summary of Genotypes for ss68766388 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120G=0.93333334
C=0.06666667G/G=0.86666667
C/G=0.13333334
Pr(chiSq=0.039,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090G=0.87777776
C=0.12222222G/G=0.77777779
C/G=0.20000000
C/C=0.02222222
Pr(chiSq=0.207,df=1)
=0.655		Genotype
Freq.
HapMap-JPT9090G=0.92222220
C=0.07777778G/G=0.84444445
C/G=0.15555556
Pr(chiSq=0.048,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120G=0.86666667
C=0.13333334G/G=0.78333336
C/G=0.16666667
C/C=0.05000000
Pr(chiSq=4.665,df=1)
=0.050		Genotype
Freq.

  Submitted individual genotype for ss68766388 back to top
There is no individual genotype data for ss68766388.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement