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Submitted SNP(ss) Details: ss68772215           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP00555962
RefSNP(rs#)rs17109623
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68772215|allelePos=65|len=129|taxid=9606|alleles='A/G'|mol=Genomic
 AAATGAGATT TTGGGTGACA CAGCCAAACC ATATCACTGT GCATGGAACA
 TTGGCCAGTG GAAT
 R
 TTAAGAAAAT GTAC
 CTGGTGTTCA ACAATAAGAT AGTTTTCTTC AAGTGAGAAG TTTCCCCTCT

  Submitted Frequency for ss68772215 back to top
There is no frequency submission for ss68772215.


  dbSNP summary of Genotypes for ss68772215 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120A=0.80833334
G=0.19166666A/A=0.68333334
A/G=0.25000000
G/G=0.06666667
Pr(chiSq=2.239,df=1)
=0.150		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090A=0.98888886
G=0.01111111A/A=0.97777778
A/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120A=0.83333331
G=0.16666667A/A=0.68333334
A/G=0.30000001
G/G=0.01666667
Pr(chiSq=0.384,df=1)
=0.584		Genotype
Freq.

  Submitted individual genotype for ss68772215 back to top
There is no individual genotype data for ss68772215.

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