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Submitted SNP(ss) Details: ss68775407           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01073183
RefSNP(rs#)rs4908329
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68775407|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 CTCGGCAAAT ATTTGTACTC TTCTTTCAAT GGCAACCTGA GCTAGAACTT
 AAATTCTATC CTAG
 Y
 ATTACACCAT TTCT
 ATAAACAATG ATGTTTGCAG TGTTCATTAT CCAAGTGGCT AGTGATTCTA

  Submitted Frequency for ss68775407 back to top
There is no frequency submission for ss68775407.


  dbSNP summary of Genotypes for ss68775407 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		9090C=0.74444443
T=0.25555557C/C=0.55555558
C/T=0.37777779
T/T=0.06666667
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090C=0.80000001
T=0.20000000C/C=0.66666669
C/T=0.26666668
T/T=0.06666667
Pr(chiSq=1.250,df=1)
=0.273		Genotype
Freq.
HapMap-CEU120120T=0.53333336
C=0.46666667C/T=0.56666666
T/T=0.25000000
C/C=0.18333334
Pr(chiSq=1.149,df=1)
=0.294		Genotype
Freq.
HapMap-YRI120120C=0.65833336
T=0.34166667C/C=0.46666667
C/T=0.38333333
T/T=0.15000001
Pr(chiSq=1.312,df=1)
=0.254		Genotype
Freq.

  Submitted individual genotype for ss68775407 back to top
There is no individual genotype data for ss68775407.

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