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Submitted SNP(ss) Details: ss68783610           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01130677
RefSNP(rs#)rs4657644
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68783610|allelePos=65|len=129|taxid=9606|alleles='T/G'|mol=Genomic
 TGTCACTCAC TGAGACACAT TTCCTCCCTC CACCCCCACC CATCTTTCTT
 AAAATTTAGC ATTT
 K
 CTGGACAAGA TCAG
 GCTTACTATA AGACAGTGCT TAGAAAAACT GATGTTAAGA TGGAAAAAAT

  Submitted Frequency for ss68783610 back to top
There is no frequency submission for ss68783610.


  dbSNP summary of Genotypes for ss68783610 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.93333334
G=0.06666667T/T=0.88333333
G/T=0.10000000
G/G=0.01666667
Pr(chiSq=2.315,df=1)
=0.150		Genotype
Freq.
HapMap-YRI120120T=0.57499999
G=0.42500001G/T=0.61666667
T/T=0.26666668
G/G=0.11666667
Pr(chiSq=4.110,df=1)
=0.050		Genotype
Freq.

  Submitted individual genotype for ss68783610 back to top
There is no individual genotype data for ss68783610.

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