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Submitted SNP(ss) Details: ss68853389           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP04476897
RefSNP(rs#)rs357116
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68853389|allelePos=65|len=129|taxid=9606|alleles='A/G'|mol=Genomic
 TGAGTCTGCA TACAGCAGGT GCTTAATAAA AGTCCTCAAG GGGATTGGTT
 ATCCCATGTT CCTT
 R
 GGCATAAATC ACCT
 TGCTCTGCAG ATGGGCAGTG GGATACATCC AATCCATGGT TTGCTGAGCA

  Submitted Frequency for ss68853389 back to top
There is no frequency submission for ss68853389.


  dbSNP summary of Genotypes for ss68853389 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.50833333
A=0.49166667A/G=0.55000001
G/G=0.23333333
A/A=0.21666667
Pr(chiSq=0.604,df=1)
=0.439
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.50000000A/G=0.37777779
A/A=0.31111112
G/G=0.31111112
Pr(chiSq=2.689,df=1)
=0.150
Genotype
Freq.
HapMap-JPT9090G=0.53333336
A=0.46666667A/G=0.57777780
G/G=0.24444444
A/A=0.17777778
Pr(chiSq=1.162,df=1)
=0.294
Genotype
Freq.
HapMap-YRI120120A=0.72500002
G=0.27500001A/A=0.53333336
A/G=0.38333333
G/G=0.08333334
Pr(chiSq=0.090,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss68853389 back to top
There is no individual genotype data for ss68853389.