Submitter Handle PERLEGEN Submitter SNP ID PGP04476897 RefSNP(rs#) rs357116 Submitted Batch ID PGP_29-JAN-2007 Submitted Date Jan 30, 2007 Publication Cited N.D. First entry to dbSNP Jan 30 2007 12:00:00:000AM Resource Links GenBank Accession NC_000003.9 Submitted Gene Name N.D Submitted Gene ID N.D. Submitted SNP Synonyms N.D Submitted linkout N.D Assay Species Homo sapiens Molecular Type Genomic Method PERLEGEN-600K Ascertainment Samplesize 1 Population N.D. Allele Observed Allele A/G Ancestral Allele N.D. Allele Origin N/A SNP Class SNV CpG Code N.D. Validation Validation Status HWE Goodness of Fit not applicable Variation Frequency Submission N.D. Genotype Summary population count: 4 Genotype Submission N.D. Haplotype N.D.   Fasta sequence   (Legend) >gnl|dbSNP|ss68853389|allelePos=65|len=129|taxid=9606|alleles='A/G'|mol=Genomic TGAGTCTGCA TACAGCAGGT GCTTAATAAA AGTCCTCAAG GGGATTGGTT ATCCCATGTT CCTT R GGCATAAATC ACCT TGCTCTGCAG ATGGGCAGTG GGATACATCC AATCCATGGT TTGCTGAGCA   Submitted Frequency for ss68853389 There is no frequency submission for ss68853389.   dbSNP summary of Genotypes for ss68853389 Population ID  -Class Total Sample (2N) Founder (2N) Major Allele Freq. Minor Allele Freq. Genotype Freq. HWE Goodness of Fit Data Source HapMap-CEU 120 120 G=0.50833333 A=0.49166667 A/G=0.55000001 G/G=0.23333333 A/A=0.21666667 Pr(chiSq=0.604,df=1) =0.439 Genotype Freq. HapMap-HCB - EAST ASIA 90 90 A=0.50000000 A/G=0.37777779 A/A=0.31111112 G/G=0.31111112 Pr(chiSq=2.689,df=1) =0.150 Genotype Freq. HapMap-JPT 90 90 G=0.53333336 A=0.46666667 A/G=0.57777780 G/G=0.24444444 A/A=0.17777778 Pr(chiSq=1.162,df=1) =0.294 Genotype Freq. HapMap-YRI 120 120 A=0.72500002 G=0.27500001 A/A=0.53333336 A/G=0.38333333 G/G=0.08333334 Pr(chiSq=0.090,df=1) =1.000 Genotype Freq.   Submitted individual genotype for ss68853389 There is no individual genotype data for ss68853389.

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