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Submitted SNP(ss) Details: ss68906301           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP03412667
RefSNP(rs#)rs17599091
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68906301|allelePos=65|len=129|taxid=9606|alleles='C/G'|mol=Genomic
 AGAAGACAGC TTTGTTATAG CTGTGCTTGC TGAAGAAACA CACAATTTTG
 GACTGAATTT CCTA
 S
 AAACCATTAA GGGG
 AAAATAGTAT CGAAGTAAGA TAATGCTAAA ATTTTTATTT TCTTTGCTAT

  Submitted Frequency for ss68906301 back to top
There is no frequency submission for ss68906301.


  dbSNP summary of Genotypes for ss68906301 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-JPT9090C=0.98888886
G=0.01111111C/C=0.97777778
C/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-CEU120120C=0.95833331
G=0.04166667C/C=0.91666669
C/G=0.08333334
Pr(chiSq=0.009,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120C=0.94999999
G=0.05000000C/C=0.89999998
C/G=0.10000000
Pr(chiSq=0.016,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss68906301 back to top
There is no individual genotype data for ss68906301.

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