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Submitted SNP(ss) Details: ss69009671           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP04074227
RefSNP(rs#)rs123
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69009671|allelePos=65|len=129|taxid=9606|alleles='C/A'|mol=Genomic
 GATACTTACA TGCTTCTCTC CTACCTGAAC TGTAAGCTCC TGGAGGACCT
 GGTCTCTATG ATTC
 M
 TATATCCTGC TGCC
 TAGCAAAACA CCTGTCATAT GATAGGTACT CAAAAAATTC TTGATGAACT

  Submitted Frequency for ss69009671 back to top
There is no frequency submission for ss69009671.


  dbSNP summary of Genotypes for ss69009671 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.55000001
A=0.44999999A/C=0.50000000
C/C=0.30000001
A/A=0.20000000
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.85555553
C=0.14444445A/A=0.73333335
A/C=0.24444444
C/C=0.02222222
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090A=0.94444442
C=0.05555556A/A=0.88888890
A/C=0.11111111
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120A=0.83333331
C=0.16666667A/A=0.69999999
A/C=0.26666668
C/C=0.03333334
Pr(chiSq=0.096,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss69009671 back to top
There is no individual genotype data for ss69009671.

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