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Submitted SNP(ss) Details: ss69068737           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP05254086
RefSNP(rs#)rs7910400
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69068737|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 CTAAGGTGGT TATGTTGAGA TTAGGTGTGG AATTCTTGGC ATCATTTGAA
 GTTACTCTGT ATCC
 Y
 AGTAATGCTG AAAG
 CATGTGTGTC TTATTTGTAC TTCTTGATAA ACTTCTTTTT GGAGATTGCG

  Submitted Frequency for ss69068737 back to top
There is no frequency submission for ss69068737.


  dbSNP summary of Genotypes for ss69068737 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.61666667
C=0.38333333C/T=0.53333336
T/T=0.34999999
C/C=0.11666667
Pr(chiSq=0.984,df=1)
=0.343		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.85555553
T=0.14444445C/C=0.73333335
C/T=0.24444444
T/T=0.02222222
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090C=0.83333331
T=0.16666667C/C=0.71111113
C/T=0.24444444
T/T=0.04444445
Pr(chiSq=0.648,df=1)
=0.439		Genotype
Freq.
HapMap-YRI120120C=0.89999998
T=0.10000000C/C=0.80000001
C/T=0.20000000
Pr(chiSq=0.141,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss69068737 back to top
There is no individual genotype data for ss69068737.

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