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Submitted SNP(ss) Details: ss69128241           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP04778644
RefSNP(rs#)rs1050112
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69128241|allelePos=65|len=129|taxid=9606|alleles='G/T'|mol=Genomic
 CTAGCTACCT GACGATATGA GGCAAAAGAC AAGGAAGCAG GACTGTGAGC
 GCGGGCAGTC GGGG
 K
 AAGATAGGAA CCAA
 CGGCCGGAGC CAAAATAGGA AAAAAGCTAG AAGTAGATGT TTCCCATGGA

  Submitted Frequency for ss69128241 back to top
There is no frequency submission for ss69128241.


  dbSNP summary of Genotypes for ss69128241 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.54166669
T=0.45833334G/T=0.55000001
G/G=0.26666668
T/T=0.18333334
Pr(chiSq=0.696,df=1)
=0.439
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.66666669
T=0.33333334G/G=0.46666667
G/T=0.40000001
T/T=0.13333334
Pr(chiSq=0.450,df=1)
=0.527
Genotype
Freq.
HapMap-JPT9090G=0.66666669
T=0.33333334G/T=0.48888889
G/G=0.42222223
T/T=0.08888889
Pr(chiSq=0.450,df=1)
=0.527
Genotype
Freq.
HapMap-YRI120120T=0.51666665
G=0.48333332G/T=0.50000000
T/T=0.26666668
G/G=0.23333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss69128241 back to top
There is no individual genotype data for ss69128241.

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