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Submitted SNP(ss) Details: ss69129450           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP06884206
RefSNP(rs#)rs7335242
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69129450|allelePos=65|len=129|taxid=9606|alleles='A/G'|mol=Genomic
 TGTGTAACGA CACGATGACA TTTTTCACAA CGACAAAATC GCCTAATGCT
 GCATTTCTCG GAAC
 R
 TATCCCTATT GTTA
 AGAGACGTAT GACTATATTC TTTCTGTAAT AGTGATAAAA GTACAGAATG

  Submitted Frequency for ss69129450 back to top
There is no frequency submission for ss69129450.


  dbSNP summary of Genotypes for ss69129450 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.71666664
G=0.28333333A/A=0.55000001
A/G=0.33333334
G/G=0.11666667
Pr(chiSq=1.927,df=1)
=0.200
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.60000002
G=0.40000001A/A=0.42222223
A/G=0.35555556
G/G=0.22222222
Pr(chiSq=3.025,df=1)
=0.100
Genotype
Freq.
HapMap-JPT9090A=0.51111114
G=0.48888889A/A=0.35555556
G/G=0.33333334
A/G=0.31111112
Pr(chiSq=6.412,df=1)
=0.020
Genotype
Freq.
HapMap-YRI120120G=0.61666667
A=0.38333333A/G=0.50000000
G/G=0.36666667
A/A=0.13333334
Pr(chiSq=0.199,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss69129450 back to top
There is no individual genotype data for ss69129450.

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