NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss69371818           
Submitter
HandleTAPPERS
Submitter SNP IDCHRNB2X6b_R266_A/G
RefSNP(rs#)rs2072661
Submitted Batch IDRDT2007March29
Submitted DateMar 29, 2007
Publication CitedN.D.
First entry to dbSNPMar 29 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodRDT-PYROSEQUENCING
Ascertainment Samplesize872
PopulationMOTWINS
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Conditions for pyrosequencing are listed below:Forward primer: TGGCCTGACACAATGGTAGCTBiotinylated reverse primer: ACTCAAGCAGCGGCAGGTSequencing primer: AAGAGAGAGGCCTGGPCR conditions for pyro sequencing:Template: 10 ng genomic DNA in 15uL final reaction volumePrimer: each 0.27uMdNTPs:each 0.125mM;PCR buffer: 1.5ul (10x) AmpliTaq Gold buffer, Mg 2.0mM, Taq Gold Polymerase: 0.027units/ul5 min 95C denature and 10 min 72C final extension; 50 cycles: 20s at 95C, 30s at 59C, 20s at 72C

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69371818|allelePos=51|len=101|taxid=9606|alleles='A/G'|mol=Genomic
 GGCCTGACAC AATGGTAGCT CTGAAGGGAG GGGAAGAGAG AGGCCTGGGT
 R
 TGACCTGACA CCTGCCGCTG CTTGAGTGGA CAGCAGCTGG ACTGGGTGGG

  Submitted Frequency for ss69371818 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
MOTWINS
NORTH AMERICA
872G=0.77200001
A=0.22800000
RDT2007March29TAPPERS


  dbSNP summary of Genotypes for ss69371818 back to top
No sufficient data to compute Hardy-weinberg probability for ss69371818.


  Submitted individual genotype for ss69371818 back to top
There is no individual genotype data for ss69371818.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement