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Submitted SNP(ss) Details: ss70457417           
Submitter
HandleEGP_SNPS
Submitter SNP IDTNFRSF25-005941
RefSNP(rs#)rs34529016
Submitted Batch IDTNFRSF25-PDR90-041007
Submitted DateApr 19, 2007
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPApr 19 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90-PANEL
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss70457417|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TTCAATGGAA GGAGAGCCCC ATGGTGCTGG GGGACAAGAG GAAGGAGGCG GGGGCAGGGG
 ACTCAAGGCA GAAGCAAGAG TTCTGCTGGG CTACAGTGAG AGCAGGGCCA ACTGTGGGAG
 GTGTCATTGC GGGGGTGTCT GCTGACTGAA CCAGGGACTG TCCCCTCCTG GAGAGGCACT
 GCGGGTAAGG GGCCTTACTT GGCAAGCAGG GCTGACCTGG GGCCCCTCTT GGCTTCCAGG
 CCACCCATCT GTCAC
 S
 CTTGGACAGC GCCCACACCC TTCTAGCACC TCCTGACAGC AGTGAGAAGA TCTGCACCGT
 CCAGTTGGTG GGTAACAGCT GGACCCCTGG CTACCCCGAG ACCCAGGAGG CGCTCTGCCC
 GCAGGTGACA TGGTCCTGGG ACCAGTTGCC CAGCAGAGCT CTTGGTAAGG GACATCAGTG
 GCCTGAGGCC TTGACCCCAT TCTCCTGTCT GCGGTGGGAA GTTGTGGTTT CACAACGTGT
 TCCCTTTCTG CCCCC

  Submitted Frequency for ss70457417 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90-PANEL158C=0.99367100
G=0.00632900
TNFRSF25-PDR90-041007EGP_SNPS


  dbSNP summary of Genotypes for ss70457417 back to top
No sufficient data to compute Hardy-weinberg probability for ss70457417.


  Submitted individual genotype for ss70457417 back to top
There is no individual genotype data for ss70457417.

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