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Submitted SNP(ss) Details: ss71643128           
Submitter
HandleSI_EXO
Submitter SNP IDNT_030059.12_8475261
RefSNP(rs#)rs701848
Submitted Batch IDSI_EXO_20070501
Submitted DateMay 07, 2007
Publication CitedN.D.
First entry to dbSNPMay 7 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSI_EXOSEQ_1
Ascertainment Samplesize19
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Warning: Incomplete sequence coverage - frequency may be inaccurate.ExoSeq_class:SHW1Estimated_frequency:.3684Minor_allele:T

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss71643128|allelePos=401|len=801|taxid=9606|alleles='C/T'|mol=Genomic
 AGTAAGCGTT TTTTTTCTTT GAAGATTTAT GATGCACTTA TTCAATAGCT GTCAGCCGTT
 CCACCCTTTT GACCTTACAC ATTCTATTAC AATGAATTTT GCAGTTTTGC ACATTTTTTA
 AATGTCATTA ACTGTTAGGG AATTTTACTT GAATACTGAA TACATATAAT GTTTATATTA
 AAAAGGACAT TTGTGTTAAA AAGGAAATTA GAGTTGCAGT AAACTTTCAA TGCTGCACAC
 AAAAAAAAGA CATTTGATTT TTCAGTAGAA ATTGTCCTAC ATGTGCTTTA TTGATTTGCT
 ATTGAAAGAA TAGGGTTTTT TTTTTTTTTT TTTTTTTTTT TTTTAAATGT GCAGTGTTGA
 ATCATTTCTT CATAGTGCTC CCCCGAGTTG GGACTAGGGC
 Y
 TCAATTTCAC TTCTTAAAAA AAATCATCAT ATATTTGATA TGCCCAGACT GCATACGATT
 TTAAGCGGAG TACAACTACT ATTGTAAAGC TAATGTGAAG ATATTATTAA AAAGGTTTTT
 TTTTCCAGAA ATTTGGTGTC TTCAAATTAT ACCTTCACCT TGACATTTGA ATATCCAGCC
 ATTTTGTTTC TTAATGGTAT AAAATTCCAT TTTCAATAAC TTATTGGTGC TGAAATTGTT
 CACTAGCTGT GGTCTGACCT AGTTAATTTA CAAATACAGA TTGAATAGGA CCTACTAGAG
 CAGCATTTAT AGAGTTTGAT GGCAAATAGA TTAGGCAGAA CTTCATCTAA AATATTCTTA
 GTAAATAATG TTGACACGTT TTCCATACCT TGTCAGTTTC

  Submitted Frequency for ss71643128 back to top
There is no frequency submission for ss71643128.


  dbSNP summary of Genotypes for ss71643128 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU222222T=0.62612611
C=0.37387386C/T=0.44144145
T/T=0.40540540
C/C=0.15315315
Pr(chiSq=0.362,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686T=0.66279072
C=0.33720931C/T=0.53488374
T/T=0.39534885
C/C=0.06976745
Pr(chiSq=1.662,df=1)
=0.200
Genotype
Freq.
HapMap-JPT170170T=0.59411764
C=0.40588236C/T=0.41176471
T/T=0.38823530
C/C=0.20000000
Pr(chiSq=1.817,df=1)
=0.200
Genotype
Freq.
HapMap-YRI226226T=0.88053095
C=0.11946902T/T=0.77876109
C/T=0.20353982
C/C=0.01769911
Pr(chiSq=0.120,df=1)
=0.752
Genotype
Freq.
HAPMAP-ASW9696T=0.79166669
C=0.20833333T/T=0.62500000
C/T=0.33333334
C/C=0.04166667
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282T=0.54878050
C=0.45121950C/T=0.41463414
T/T=0.34146342
C/C=0.24390244
Pr(chiSq=1.086,df=1)
=0.317
Genotype
Freq.
HAPMAP-CHD168168T=0.58928573
C=0.41071430C/T=0.46428570
T/T=0.35714287
C/C=0.17857143
Pr(chiSq=0.140,df=1)
=0.752
Genotype
Freq.
HAPMAP-GIH176176C=0.58522725
T=0.41477272C/T=0.44318181
C/C=0.36363637
T/T=0.19318181
Pr(chiSq=0.668,df=1)
=0.439
Genotype
Freq.
HAPMAP-LWK180180T=0.91111112
C=0.08888889T/T=0.84444445
C/T=0.13333334
C/C=0.02222222
Pr(chiSq=2.814,df=1)
=0.100
Genotype
Freq.
HAPMAP-MKK284284T=0.96478873
C=0.03521127T/T=0.92957747
C/T=0.07042254
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176T=0.58522725
C=0.41477272C/T=0.48863637
T/T=0.34090909
C/C=0.17045455
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss71643128 back to top
There is no individual genotype data for ss71643128.