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Submitted SNP(ss) Details: ss76901691           
Submitter
HandleUUGC
Submitter SNP IDCHRNB2_6893
RefSNP(rs#)rs2072661
Submitted Batch IDUUGC_NICOTINIC
Submitted DateOct 01, 2007
Publication Cited[1] Polymorphism Discovery on 10 Cholinergic Nicotinic Receptor Genes
First entry to dbSNPOct 1 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodGAP_SEQUENCE
Ascertainment Samplesize384
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss76901691|allelePos=502|len=1003|taxid=9606|alleles='G/A'|mol=Genomic
 TCAGACCACT CAGCCCCCAG CTCCAAGTGA GGCCCTTCCT CATCTCCATG CTCTTTCACC
 CTGCCACCCT CTGCTGCACA GTAGTGTTGG GTGGAGGATG GACGAGTGAG CTACCAGGAA
 GAGGGGCGCT GCCCCCACAG ATCCATCCTT TTGCTTCATC TGGAGTCCCT CCTCCCCCAC
 GCCTCCATCC ACACACAGCA GCTCCAACCT GGAGGCTGGA CCAACTGCTT TGTTTTGGCT
 GCTCTC
 CATCTCTTGT ACCAGCCCAG GCAATAGTGT TGAGGAGGGG AGCAAGGCTG CTAAGTGGAA
 GACAGAGATG GCAGAGCCAT CCACCCTGAG GAGTGATGGG CAAGGGGCCA GGAAGGGGAC
 AGGATTGTCT GCTGCCTCCA AGTCATGGGA GAAGAGGGGT ATAGGACAAG GGGTGGAAGG
 GCAGGAGCTC ACACCGCACC GGGCTGGCCT GACACAATGG TAGCTCTGAA GGGAGGGGAA
 GAGAGAGGCC TGGGT
 R
 TGACCTGACA CCTGCCGCTG CTTGAGTGGA CAGCAGCTGG ACTGGGTGGG CCCCACAGTG
 GTCAGCGATT CCTGCCAAGT AGGGTTTAGC CGGGCCCCAT GGTCACAGAC CCCTGGGGGA
 GGCTTCCAGC TCAGTCCCAC AGCCCCTTGC TTCTAAGGGA TCCAGAGACC TGCTCCAGAT
 CCTCTTTCCC CACTGAAGAA TTCTGCACCC TCTGGACTTC CCTCTTCTTC CTTCCTTTCT
 CAGGCTCAAG GTGTG
 GGGGGCAAGG CTGAGTATTA GGGGAGCTTC TGAGTTCTGA ATCTTTGGGT GACCTGCTTG
 GAGTCTCAGG TCCAAATACT TGAAATCTGT GAGAAGTCCA AGTTCATGGG CTTTTGGAAC
 TGGAAGAACT TTGTACAGCC ATGGATTCCA ACATAAGCCA TGTTGCAGAT GAAGAAACTG
 ACCCACACGG TGAGACAAGC ACAGGTGGGT CTGACTCTTC CTCCCTGCCC TGAGATCCAT
 CTGTCG

  Submitted Frequency for ss76901691 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
GAP
- EUROPE 		368G=0.74180001
A=0.25819999
UUGC_NITOTINICUUGC


  dbSNP summary of Genotypes for ss76901691 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
GAP
- EUROPE 		368368G=0.74184781
A=0.25815219G/G=0.55434781
A/G=0.37500000
A/A=0.07065217
Pr(chiSq=0.081,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss76901691 back to top
There is no individual genotype data for ss76901691.

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