NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss76901693           
Submitter
HandleUUGC
Submitter SNP IDCHRNB2_6960
RefSNP(rs#)rs4292956
Submitted Batch IDUUGC_NICOTINIC
Submitted DateOct 01, 2007
Publication Cited[1] Polymorphism Discovery on 10 Cholinergic Nicotinic Receptor Genes
First entry to dbSNPOct 1 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodGAP_SEQUENCE
Ascertainment Samplesize384
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss76901693|allelePos=502|len=1003|taxid=9606|alleles='C/T'|mol=Genomic
 CCCTCTGCTG CACAGTAGTG TTGGGTGGAG GATGGACGAG TGAGCTACCA GGAAGAGGGG
 CGCTGCCCCC ACAGATCCAT CCTTTTGCTT CATCTGGAGT CCCTCCTCCC CCACGCCTCC
 ATCCACACAC AGCAGCTCCA ACCTGGAGGC TGGACCAACT GCTTTGTTTT GGCTGCTCTC
 CATCTCTTGT ACCAGCCCAG GCAATAGTGT TGAGGAGGGG AGCAAGGCTG CTAAGTGGAA
 GACAGA
 GATGGCAGAG CCATCCACCC TGAGGAGTGA TGGGCAAGGG GCCAGGAAGG GGACAGGATT
 GTCTGCTGCC TCCAAGTCAT GGGAGAAGAG GGGTATAGGA CAAGGGGTGG AAGGGCAGGA
 GCTCACACCG CACCGGGCTG GCCTGACACA ATGGTAGCTC TGAAGGGAGG GGAAGAGAGA
 GGCCTGGGTG TGACCTGACA CCTGCCGCTG CTTGAGTGGA CAGCAGCTGG ACTGGGTGGG
 CCCCACAGTG GTCAG
 Y
 GATTCCTGCC AAGTAGGGTT TAGCCGGGCC CCATGGTCAC AGACCCCTGG GGGAGGCTTC
 CAGCTCAGTC CCACAGCCCC TTGCTTCTAA GGGATCCAGA GACCTGCTCC AGATCCTCTT
 TCCCCACTGA AGAATTCTGC ACCCTCTGGA CTTCCCTCTT CTTCCTTCCT TTCTCAGGCT
 CAAGGTGTGG GGGGCAAGGC TGAGTATTAG GGGAGCTTCT GAGTTCTGAA TCTTTGGGTG
 ACCTGCTTGG AGTCT
 CAGGTCCAAA TACTTGAAAT CTGTGAGAAG TCCAAGTTCA TGGGCTTTTG GAACTGGAAG
 AACTTTGTAC AGCCATGGAT TCCAACATAA GCCATGTTGC AGATGAAGAA ACTGACCCAC
 ACGGTGAGAC AAGCACAGGT GGGTCTGACT CTTCCTCCCT GCCCTGAGAT CCATCTGTCG
 AGTGCCCTGT TTTTTCCCCA CTTTGAACTG ACTGGTTACT CTAAGGAAGT GAACTGAGGA
 TGTTAG

  Submitted Frequency for ss76901693 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
GAP
- EUROPE 		368C=0.93210000
T=0.06790000
UUGC_NITOTINICUUGC


  dbSNP summary of Genotypes for ss76901693 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
GAP
- EUROPE 		368368C=0.93206519
T=0.06793478C/C=0.86956519
C/T=0.12500000
T/T=0.00543478
Pr(chiSq=0.031,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss76901693 back to top
There is no individual genotype data for ss76901693.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement