NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss76901826           
Submitter
HandleUUGC
Submitter SNP IDCHRNA2_61421
RefSNP(rs#)rs56344740
Submitted Batch IDUUGC_NICOTINIC
Submitted DateOct 01, 2007
Publication Cited[1] Polymorphism Discovery on 10 Cholinergic Nicotinic Receptor Genes
First entry to dbSNPOct 1 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGAP_SEQUENCE
Ascertainment Samplesize384
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginA:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss76901826|allelePos=502|len=1003|taxid=9606|alleles='C/A'|mol=Genomic
 GCTGCTCATC ACTGAGATCA TCCCGTCCAC CTCGCTGGTC ATCCCGCTCA TCGGCGAGTA
 CCTGCTGTTC ACCATGATCT TCGTCACCCT GTCCATCGTC ATCACCGTCT TCGTGCTCAA
 TGTGCACCAC CGCTCCCCCA GCACCCACAC CATGCCCCAC TGGGTGCGGG GGGCCCTTCT
 GGGCTGTGTG CCCCGGTGGC TTCTGATGAA CCGGCCCCCA CCACCCGTGG AGCTCTGCCA
 CCCCCT
 ACGCCTGAAG CTCAGCCCCT CTTATCACTG GCTGGAGAGC AACGTGGATG CCGAGGAGAG
 GGAGGTGGTG GTGGAGGAGG AGGACAGATG GGCATGTGCA GGTCATGTGG CCCCCTCTGT
 GGGCACCCTC TGCAGCCACG GCCACCTGCA CTCTGGGGCC TCAGGTCCCA AGGCTGAGGC
 TCTGCTGCAG GAGGGTGAGC TGCTGCTATC ACCCCACATG CAGAAGGCAC TGGAAGGTGT
 GCACTACATT GCCGA
 M
 CACCTGCGGT CTGAGGATGC TGACTCTTCG GTGCGTTGGG GTTGGGAGAG GCGCCAGCCT
 GGGTGGCCCC ACCAACTTAG CGGGGAACCA CCTTACCGCA GAGTGTGAGC TTGGGCAGCC
 CAGGCCCCTC TCGTGAAGGC CCACTTTCCT CAGTCATGGT CCTTAGATGG AATAAATAGC
 AAGAGAGCAC ATGTAGCTGG CCGCTTTGAG GACGTTTATT GGCACGTGGC ATGTTACACA
 CCACGGAGTC AGGCA
 TGAGCAGCTC AGCCTAACAG GGATCCTGAG AGCCGGAGAG GGAGGATCCC AGATGCTGAA
 CCCCGTGCCT CCCTCACGCC GCCAGCTCCC ACCATTGCCT TGGAGGTGGC GGCAGGCAGG
 GGGAGCATTT CAGGAGAGAC CCAGAAAGTC AGCTGCTGCA GTGTCAGCCT TTGTCTTTTG
 TCTTGGATGG TCTCTTCCTC CGCCTCCTTG TTCATGGGCT CCTGAGGATC TTGCAAACTT
 CACTCT

  Submitted Frequency for ss76901826 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
GAP
EUROPE
382C=0.99479997
A=0.00520000
UUGC_NITOTINICUUGC


  dbSNP summary of Genotypes for ss76901826 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
GAP
EUROPE
382382C=0.99476439
A=0.00523560C/C=0.98952878
A/C=0.01047120
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss76901826 back to top
There is no individual genotype data for ss76901826.