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Submitted SNP(ss) Details: ss77192275           
Submitter
HandleHGSV
Submitter SNP IDCor12156_SNV_20070510.chr10_6354227
RefSNP(rs#)rs1544198
Submitted Batch IDNA12156-Fosmids-20070510
Submitted DateOct 09, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 9 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12156-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality105973534 421 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss77192275|allelePos=337|len=837|taxid=9606|alleles='G/A'|mol=Genomic
 GGTGTGGAAG TGGGAGAGGC AGGTACCTAT TTACTTAGGG AATATTTACC AATCTCTACC
 ATGTGTGGGA ATCTGTGCTT AGCACTGAGG ATAGACCAGA GGGTGGGATA GACAGTTGCC
 CCTGCCCCGA TGGTGGCTGC CATCCAGCAG GGAGGGCAGA TGTGAAGCAT TACATACGTG
 CTTACTTGCC ATTGTGCATG TATGTTGTAT GTTATGAACA AGTGCAAAGC ACCCCGAGTT
 CACAGACAGG GGCTGTAACT GTCTAGTTTG GTGAATGGCT GATGAAGGCA GTGCTGGGAG
 ATGATAAATG TCCCTTCTGT CCCTTAGGAC TTGCAG
 R
 TAATGGTCTC CTGTGTCCCT CCCTTGACTC CAGGCTGTCT AGTGAAGGTG ATCGTTCCAA
 TTGCCCTATT AGGACATCGG GGTTTCTTAA CTAAACCCTG AATGATGCCT TGGATTTATG
 CATTCTGGCC AACGTGTTGA AATACGTCAG TCTGGCTGGG CACGGTGGCT CATGCCTGTA
 ATCCTAGCAC TTTGGGAGGC CGAGGCGGGC GGATCACCTG AGGTCAGGAG TTTGAGACCA
 GCCTGGCCAA CATGGTGAAC CCCGTCTCTA CTAAAAATAC AAAAATTTTA GCTGGGCATG
 GTGGTGGGTG CCTGTAATCC CAGCTACTTG GGAGGCTGAG GCAGGAGAAT TGTTTGAACC
 CGGGAGGCAG AGGTTCCAGT GAGCCCAGAT CGTGCCATTG AACTCCAGCC TGGGTGACAG
 AGGGAGACTC TGTCTCAAAA AAAAGAAAAA AGAAATAGGT CGACCTGGGC CCCAGCCGCG
 CTGTGCTTTC ATGAGTTTCC

  Submitted Frequency for ss77192275 back to top
There is no frequency submission for ss77192275.


  dbSNP summary of Genotypes for ss77192275 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.66814160
G=0.33185840A/G=0.48672566
A/A=0.42477876
G/G=0.08849557
Pr(chiSq=1.076,df=1)
=0.317
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.69767439
A=0.30232558G/G=0.51162791
A/G=0.37209302
A/A=0.11627907
Pr(chiSq=0.598,df=1)
=0.479
Genotype
Freq.
HapMap-JPT172172G=0.69186044
A=0.30813953G/G=0.51162791
A/G=0.36046511
A/A=0.12790698
Pr(chiSq=2.055,df=1)
=0.200
Genotype
Freq.
HapMap-YRI226226G=0.66371679
A=0.33628318G/G=0.45132744
A/G=0.42477876
A/A=0.12389380
Pr(chiSq=0.265,df=1)
=0.655
Genotype
Freq.
HAPMAP-ASW9898G=0.70408165
A=0.29591838A/G=0.46938777
G/G=0.46938777
A/A=0.06122449
Pr(chiSq=0.783,df=1)
=0.403
Genotype
Freq.
HAPMAP-CHB8282G=0.65853661
A=0.34146342G/G=0.46341464
A/G=0.39024389
A/A=0.14634146
Pr(chiSq=0.717,df=1)
=0.403
Genotype
Freq.
HAPMAP-CHD170170G=0.65882355
A=0.34117648A/G=0.47058824
G/G=0.42352942
A/A=0.10588235
Pr(chiSq=0.186,df=1)
=0.752
Genotype
Freq.
HAPMAP-GIH176176G=0.57954544
A=0.42045453A/G=0.50000000
G/G=0.32954547
A/A=0.17045455
Pr(chiSq=0.059,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180G=0.73333335
A=0.26666668G/G=0.52222222
A/G=0.42222223
A/A=0.05555556
Pr(chiSq=0.569,df=1)
=0.479
Genotype
Freq.
HAPMAP-MEX100100A=0.62000000
G=0.38000000A/G=0.60000002
A/A=0.31999999
G/G=0.08000000
Pr(chiSq=3.736,df=1)
=0.100
Genotype
Freq.
HAPMAP-MKK286286G=0.76223779
A=0.23776224G/G=0.58041960
A/G=0.36363637
A/A=0.05594406
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176A=0.58522725
G=0.41477272A/G=0.46590909
A/A=0.35227272
G/G=0.18181819
Pr(chiSq=0.143,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss77192275 back to top
There is no individual genotype data for ss77192275.

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