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Submitted SNP(ss) Details: ss78081845           
Submitter
HandleHGSV
Submitter SNP IDCor12878_SNV_20070510.chr1_3770476
RefSNP(rs#)rs4648417
Submitted Batch IDNA12878-Fosmids-20070510
Submitted DateOct 17, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 17 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12878-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality88786312 186 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss78081845|allelePos=501|len=815|taxid=9606|alleles='C/T'|mol=Genomic
 CGTCTCGGGG GCCCACAGTT TCTCATCCTC CTTGGAGGTG TGCGCTCCTG CGTAGCCGAT
 GTGCAGATTT CAGGTTTTTG GATTTGGGAT CCAAACCAGT AAGTATAATG GAAGTATTCC
 AGAATCCGAA AACAATCTGA AATCCTAAAC ACTTCTGGTC TTAAGCATTC CAGATAAGGG
 GCTTCAACCT GTACCTGATA TTCTCCATCA CACTGCTGTT ATTGTCTCTT AAAGACAGGC
 CGGGCGCAGT GGCTCACGCC TGTAATCCCA GCACTTTGGG AGGCTGAGGC GGGCGGATCA
 CGAGGTCAGG AGATCGAGAC CATCCTGGCT AACACAGTGA AACCCCGTCT CTACTAAAAT
 ACACGAAAAA ATTAGCCGGG CATGGTGGTG GGCATCCTGT AGTACCAGCT ACTTGGGAGG
 CTGAGGCAGG AGAATGGCAT GAACCCAGGA GGCAGGGCTT GCAGTGAGCC GAGATGGCAC
 CACTGCACCT CCAGCCTGGG
 Y
 GACAGAACGA GACTCCATCT CAAAAAAAAA AAAAAAAAAA GACAAAGAAA TATTTTTTAT
 GATTTGTTTC TCTCCACAGA TAAAGATCTG CACACACCAT GCACCACCGA GTAGGATTAG
 ACAGCAGGAC GCATGTGGGG GCCCCCATTT GTTGGATGAA ACACTGGCTA TTTTTCTGAA
 ATCACTGCCT CAGTCATTCC TTCAACAAAT GCCGATGAGA CCCTCGCCAC GCTCCAGGCA
 CTGTGGTGAG TGCTGGGCCG CGTGGTGTGT CACACGCGAG GTCTGCTTAC CTTCATCACG
 TTGTCAATGG TGAA

  Submitted Frequency for ss78081845 back to top
There is no frequency submission for ss78081845.


  dbSNP summary of Genotypes for ss78081845 back to top
No sufficient data to compute Hardy-weinberg probability for ss78081845.


  Submitted individual genotype for ss78081845 back to top
There is no individual genotype data for ss78081845.