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Submitted SNP(ss) Details: ss78491959           
Submitter
HandleHGSV
Submitter SNP IDCor12878_SNV_20070510.chr1_99755810
RefSNP(rs#)rs1339856
Submitted Batch IDNA12878-Fosmids-20070510
Submitted DateOct 17, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 17 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12878-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality82666030 221 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss78491959|allelePos=369|len=869|taxid=9606|alleles='A/G'|mol=Genomic
 ACATATTTGT CTTTAAACGG GCATATATAA TTGTATATAA TTGCATGAAT AATCAAATTA
 TTTATCTTTA TTTTACTTTA AGTTCTAGGA TACATGTGCA ATATTATTAC TACTTTTAAT
 AACATAAAAG CTAGAATTGC AATATCCCTA GTTTAACTTA ATTGAATAAA TTTTTGTTTC
 AGCATCTTAT TTCAAAAAAA AGATAGCTAA ATTGTATTCA TTAATAACAC CCCAGAAGTT
 CAGATTTTAA TGCAATCAAG GAAAAAACTT TGTTAGGAAG TGTGACCCAA AACCGAATAG
 ATTGCCTTTA GTGAGACTGA GATCATCACT ACTTAACTTG TTCAAGCAGA ATCTGGGCCT
 TAATTAAT
 R
 TTTAGAAAAG ATTCATAAAT CAGGTAGTTA GTGAAGTCAA ATGTATGTGG GGCAATGTAT
 GTACACAGAA ATAAAGTAAA TATGACAAAA TGTTAGCAAT TTTTGAATCC AGGTAGAAAA
 TATATGGGTG TTCATTATTG TTCTCCTTTT CTGTATGCTT AATAATTTTT ATGAGATATC
 AAGAAAAAAA GTATGCAAAC TTCCTATGTG CATAACATGA CCATTTGTCA AATTATTATA
 TTATAATTGA AATGTTTTGT GACCCTTTTT CACAAACATA TTATAGGTTC TTCTCCATAA
 TAAATTTCTG TTTACATTAT CATTTGTAAT AGTAGTCTAT TGCATGGTTT TGCTTTTATT
 TTTTCAAACT AATTCTCAAA TGTAGATATT TAGATGGTTT CCATTTTGTG TTACGTGTGA
 AGCAGCAATG AGTATCTCAC ATATACATCT CATCTTTGAG GACTTTTTTC ATTTTCATAT
 AACCAATCTA TACATTTTTC

  Submitted Frequency for ss78491959 back to top
There is no frequency submission for ss78491959.


  dbSNP summary of Genotypes for ss78491959 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116G=0.69827586
A=0.30172414A/G=0.46551725
G/G=0.46551725
A/A=0.06896552
Pr(chiSq=0.637,df=1)
=0.439
Genotype
Freq.
HapMap-HCB
EAST ASIA
7272A=0.65277779
G=0.34722221A/A=0.50000000
A/G=0.30555555
G/G=0.19444445
Pr(chiSq=3.825,df=1)
=0.100
Genotype
Freq.
HapMap-JPT8080A=0.62500000
G=0.37500000A/G=0.50000000
A/A=0.37500000
G/G=0.12500000
Pr(chiSq=0.178,df=1)
=0.752
Genotype
Freq.
HapMap-YRI112112G=0.79464287
A=0.20535715G/G=0.64285713
A/G=0.30357143
A/A=0.05357143
Pr(chiSq=0.273,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss78491959 back to top
There is no individual genotype data for ss78491959.

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