Submitted SNP(ss) Details: ss80745056

Submitted SNP(ss) Details: ss80745056

Submitter
Handle	KRIBB_YJKIM
Submitter SNP ID	KHS1005041
RefSNP(rs#)	rs1903858
Submitted Batch ID	KHB2007_2_SEQUENOM
Submitted Date	Nov 26, 2007
Publication Cited	16376517
First entry to dbSNP	Nov 26 2007 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENOM_MASS_ARRAY
Ascertainment Samplesize	176
Population	KHP_Korean

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 2
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AATATCTGAG TACTTTAGTT AAGGAAAGAA ATATCTGAAA TATGCAGCAA TCAAACTAAA
 AGAATACTTT TTAAAACATT AGCTAGTTAT GAAAAGAAAG
 Y
 TTTCCCCACT ATAGCTGGAG TAATAAAAGG TGGTCAATGT ATTTATGTAT AACYATTTAT
 GTGTTAATAC TGGTAAAGAT AAAAGGTAAC TTCCACATGG

Submitted Frequency for ss80745056

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
KHP1 - EAST ASIA	176	T=0.51704502	C=0.48295501		C/T=0.39772701 T/T=0.31818199 C/C=0.28409100		KHB2007_2_SEQUENOM	KRIBB_YJKIM

dbSNP summary of Genotypes for ss80745056

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
KHP_Korean - EAST ASIA	176	176	T=0.51704544	C=0.48295453	C/T=0.39772728 T/T=0.31818181 C/C=0.28409091	Pr(chiSq=3.649,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss80745056

There is no individual genotype data for ss80745056.

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