Submitted SNP(ss) Details: ss80750519

Submitted SNP(ss) Details: ss80750519

Submitter
Handle	KRIBB_YJKIM
Submitter SNP ID	KHS1000257
RefSNP(rs#)	rs54790
Submitted Batch ID	KHB2007_2_FP-TDI
Submitted Date	Nov 26, 2007
Publication Cited	16376517
First entry to dbSNP	Nov 26 2007 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FP-TDI
Ascertainment Samplesize	178
Population	KHP_Korean

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 2
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGAAATACAT ACGAGTGGCA TTAAGGACAG GTGGTGGCTT CTTTTACCTA TTAAAGCATT
 CTTACACCAT ACTGTGAACT GTGTAAAAGG AAGGATCATT GGACATAATA GATTATCTGA
 CAGGGTGGTC CGGAATGG
 Y
 GGAAGTAAAT CGACAGGTGA GGACACTGAA TTAGCATTCA GACAGTGGGG ACCTCACACC
 TTGTATTCCC TTTTTTGGTA AGATTTTTAT TACCTCCTTA GAAAGAGGTA AATTCATCTA
 TTTCGAGCCC AAATTTTTCT GTCTAGATCT GCAATGCACG TGTGTACAAA AACCAGGGCC
 CAGCCAGGTA CGGTGGTGCG TGCCTA

Submitted Frequency for ss80750519

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
KHP1 - EAST ASIA	178	T=0.55056202	C=0.44943801		C/T=0.42696601 T/T=0.33707899 C/C=0.23595500		KHB2007_2_FP-TDI	KRIBB_YJKIM

dbSNP summary of Genotypes for ss80750519

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
KHP_Korean - EAST ASIA	178	178	T=0.55056179	C=0.44943821	C/T=0.42696628 T/T=0.33707866 C/C=0.23595506	Pr(chiSq=1.676,df=1) =0.200	Genotype Freq.

Submitted individual genotype for ss80750519

There is no individual genotype data for ss80750519.

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