Submitted SNP(ss) Details: ss8296277

Submitted SNP(ss) Details: ss8296277

Submitter
Handle	SC_SNP
Submitter SNP ID	NT_011520.8_16796207
RefSNP(rs#)	rs229526
Submitted Batch ID	10-APR-2003d
Submitted Date	Apr 17, 2003
Publication Cited	[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Apr 17 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_011520
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	CHR22_NA10470
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 16
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence:22SNP10470-321b13.p1kposition:399quality:40

Fasta sequence (Legend)

 GTGCCTTGCT CACAGCCCAt ctccccaccg agaacgggtg ctcaggcagg aggcatcttg
 gtctggtttg ttcacgctcc gtcatcagtg tttggaacag accaggctca cattggggct
 caataaCTCA GGATGAAAGA GGAGTCTGGA CAGGTTTCCG CCCTGCCCTC TACTCCCTCC
 ACCTCAGCTC CCTGGCCCTC CCTGCCCACT ACCAGGCCCC ACAGGAGGGC ACTCACCCTT
 CAGGATGGTG ATATTAATGT AGGGTCTGAT CTCAGGCAGG GCGTGGGGGC GGCCGGAGGA
 AGAGGCTGAG GATACATGGG CAGGATCCAG GGGGTCCTCA GAGTCACAGC ACCGTTGGCA
 GCCGCTGGCC ACAGCTCTGT CAAAGGTGAG CTCCACCATA
 S
 GGATCTCACA CATCAGGAGA AAGAGCAGGA GCGCTGCCCA GACGGGACCC AGGGCGGCTG
 TCCCCATGGT GACCTGGAAC AAGGAAGGAG GGACAGGAAC TATACTTCAC TCAACATCTA
 CTATGTGCCG ATGCCTGGGG TGGGCGGGTG CTGCGTCCTC CAGCCACAGC ACTCCTGACC
 TAACTCCAGA GGGAAGGtta ttgtccccat ctatcagaca agaagactga gacctccaca
 gagcagcaag ttccccaaga tcGGGAGGAG ACTGGCAGGG CAGGGCCTGC ATGCTGAGTC
 TCCGGGCACC CAGTCCATGG AGGCTTCTGC TCCACACAGG CCTTGGAAGG ATGAAGCCCC
 TCTGAAAACA GCCACAGCTG AGAGCAGACA GGGATCCCAG

Submitted Frequency for ss8296277

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.81000000	C=0.19000000	0.308 +/-0.051		1_2004	SEQUENOM
EURAME - NORTH AMERICA	32				G/G=0.81250000 C/G=0.12500000 C/C=0.06250000	nsSNP_and_controls	HGBASE
AFRAME - NORTH AMERICA	32				C/G=0.50000000 G/G=0.37500000 C/C=0.12500000	nsSNP_and_controls	HGBASE

dbSNP summary of Genotypes for ss8296277

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.77433628	C=0.22566372	G/G=0.59292036 C/G=0.36283186 C/C=0.04424779	Pr(chiSq=0.165,df=1) =0.752	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.87209302	C=0.12790698	G/G=0.79069769 C/G=0.16279070 C/C=0.04651163	Pr(chiSq=3.142,df=1) =0.100	Genotype Freq.
HapMap-JPT	172	172	G=0.94186044	C=0.05813954	G/G=0.89534885 C/G=0.09302326 C/C=0.01162791	Pr(chiSq=1.951,df=1) =0.200	Genotype Freq.
HapMap-YRI	226	226	G=0.71681416	C=0.28318584	G/G=0.50442475 C/G=0.42477876 C/C=0.07079646	Pr(chiSq=0.242,df=1) =0.655	Genotype Freq.
EURAME - NORTH AMERICA	32	32	G=0.87500000	C=0.12500000	G/G=0.81250000 C/G=0.12500000 C/C=0.06250000	Pr(chiSq=2.939,df=1) =0.100	Genotype Freq.
AFRAME - NORTH AMERICA	32	32	G=0.62500000	C=0.37500000	C/G=0.50000000 G/G=0.37500000 C/C=0.12500000	Pr(chiSq=0.071,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.72448981	C=0.27551019	G/G=0.48979592 C/G=0.46938777 C/C=0.04081633	Pr(chiSq=1.514,df=1) =0.251	Genotype Freq.
HAPMAP-CHB	82	82	G=0.89024389	C=0.10975610	G/G=0.78048778 C/G=0.21951219	Pr(chiSq=0.129,df=1) =0.752	Genotype Freq.
HAPMAP-CHD	170	170	G=0.92941177	C=0.07058824	G/G=0.85882354 C/G=0.14117648	Pr(chiSq=0.067,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	G=0.85227275	C=0.14772727	G/G=0.71590906 C/G=0.27272728 C/C=0.01136364	Pr(chiSq=0.607,df=1) =0.439	Genotype Freq.
HAPMAP-LWK	180	180	G=0.72777778	C=0.27222222	G/G=0.48888889 C/G=0.47777778 C/C=0.03333334	Pr(chiSq=3.812,df=1) =0.100	Genotype Freq.
HAPMAP-MEX	100	100	G=0.91000003	C=0.09000000	G/G=0.81999999 C/G=0.18000001	Pr(chiSq=0.084,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	G=0.82867134	C=0.17132868	G/G=0.68531471 C/G=0.28671327 C/C=0.02797203	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	174	174	G=0.82183909	C=0.17816092	G/G=0.66666669 C/G=0.31034482 C/C=0.02298851	Pr(chiSq=0.311,df=1) =0.584	Genotype Freq.

Submitted individual genotype for ss8296277

There is no individual genotype data for ss8296277.

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