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Submitted SNP(ss) Details: ss84294931           
Submitter
HandleHGSV
Submitter SNP IDCor18517_SNV_20070510.chr12_20938161
RefSNP(rs#)rs980085
Submitted Batch IDNA18517-Fosmids-20070510
Submitted DateDec 06, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPDec 6 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA18517-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality62692754 463 68

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss84294931|allelePos=501|len=701|taxid=9606|alleles='T/G'|mol=Genomic
 GGGACCTAGA GGTCTGTCAG AAGAAAGACT CAGATCTGGA AGTGGTAAAA ATGAAAGATC
 AATGAGAACT TCTACATTTC AGGCCCATTG ATGTGGAGGT TGTGGAAGGA AAAAGCCTAC
 AGGAGAGAGT TACATGGAGT GTCATTGGGA GTAAGCCAGG CTTTGTTTAG AACAAGAAAG
 TGAAAGGGCT ACAAAGAATG TAGGAACTAA ATATTTTGCT GGTAACAAAT ATGAGTTTCC
 CTGGGAAAAA TGAAAGGGTT TGAGTAATGG AAAAAGAGTA AGAGAGTGAG TGGGATTAAG
 GGATGTAGTA AACCATGTGG AATGAGAGCC TTGGTACCCA GACAGGATCT CAAAATCTTG
 ACATTCTGCT GGTGACAGGA TGTGAGGCAT GATGTAAGTT TATGACAAAC AAAACATCAA
 TTGAAAAGGC CCAAAGGAGG GTAATGTTTC AGAACTTTTT TAAAAAACTG CATTTTAGTG
 GGTTAGCTAG AAAAGATTTG
 K
 CTCATATACA CAATAAATTA GAGCTGTTCT TCAGTCTTTT GCAAACAGGA AAACAAGCAT
 TCCCTACCTG TGCTATCTAT TGTTAGGGTT TCATTAGGTC TAACTGGAAA TTACCTCAAG
 AAACAGCAGG TCATGATGGT TGATTGTCAT TAGAAAGAAC AACAGAGGAT CAATGTAAAT
 GAAATCTCTT AAATTAAACA

  Submitted Frequency for ss84294931 back to top
There is no frequency submission for ss84294931.


  dbSNP summary of Genotypes for ss84294931 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.84513277
T=0.15486726G/G=0.70796460
G/T=0.27433628
T/T=0.01769911
Pr(chiSq=0.261,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.59302324
T=0.40697673G/T=0.53488374
G/G=0.32558140
T/T=0.13953489
Pr(chiSq=0.503,df=1)
=0.479
Genotype
Freq.
HapMap-JPT172172G=0.62209302
T=0.37790698G/T=0.50000000
G/G=0.37209302
T/T=0.12790698
Pr(chiSq=0.346,df=1)
=0.584
Genotype
Freq.
HapMap-YRI226226T=0.54867256
G=0.45132744G/T=0.51327431
T/T=0.29203540
G/G=0.19469027
Pr(chiSq=0.149,df=1)
=0.752
Genotype
Freq.
HAPMAP-ASW9898G=0.56122446
T=0.43877551G/T=0.46938777
G/G=0.32653061
T/T=0.20408164
Pr(chiSq=0.108,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282G=0.70731705
T=0.29268292G/G=0.48780489
G/T=0.43902439
T/T=0.07317073
Pr(chiSq=0.149,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHD170170G=0.70588237
T=0.29411766G/T=0.49411765
G/G=0.45882353
T/T=0.04705882
Pr(chiSq=3.068,df=1)
=0.100
Genotype
Freq.
HAPMAP-GIH176176G=0.94318181
T=0.05681818G/G=0.88636363
G/T=0.11363637
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK178178T=0.59550560
G=0.40449437G/T=0.47191012
T/T=0.35955057
G/G=0.16853933
Pr(chiSq=0.037,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100G=0.86000001
T=0.14000000G/G=0.72000003
G/T=0.28000000
Pr(chiSq=0.345,df=1)
=0.584
Genotype
Freq.
HAPMAP-MKK286286G=0.50349653
T=0.49650350G/T=0.51748252
G/G=0.24475524
T/T=0.23776224
Pr(chiSq=0.175,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI176176G=0.86363637
T=0.13636364G/G=0.72727275
G/T=0.27272728
Pr(chiSq=0.558,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss84294931 back to top
There is no individual genotype data for ss84294931.

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