NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss85984325           
Submitter
HandleHGSV
Submitter SNP IDCor18956_SNV_20070510.chr10_62216320
RefSNP(rs#)rs2456774
Submitted Batch IDNA18956-Fosmids-20070510
Submitted DateNov 30, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA18956-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality72658708 -147 54

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss85984325|allelePos=306|len=684|taxid=9606|alleles='C/T'|mol=Genomic
 AACCACTCTG CAGAGGTAGC GCTGTTAGTT TTATTTGTAA TCTTACACTT GTATGTATGT
 TCACTTTGTA TGTATATAAA GATTTTTTTT TTTACACAAG GTGGACTTAT TTGCATATGT
 ATATATACAT ATTTTCCCTT TTTTGTGTAA AACATTATCA AGACGTAGAT CTACCTATGT
 CTATTTACAT TTTTGATATA ATTAAACCAC TTCCATATTG ATGAACATTT AAATTATTTT
 CCAACTTGGT TATTGTTGCT CTTATTAACA GTACTGCACT GAATGTCCTT ATAGATATTT
 ATCTT
 Y
 GTATGCAACT TTATAGGATA AATTTTTAGA ATGGGAATGA TGGATTGAAG ATGTTTATTT
 ACATTTTGAT AGATATTGCC GGTTGCCCCC TAAAAAACTT GTAGCAATTT ACTCTTAAAT
 ACTCATGGTG TGTAATACTT ATTGTTTTAG TACATCATTG CCAAAACTTG GTTTTATCAA
 TCTGTTAACT ATGTGAAAAA GGCATATTAA GATTGTTTTA ATTTTATATT TCATGACAAT
 TTAACACTTC ATATTTAGCT ATTATAAACC GCCTATATTT TCGTTAGGAT ACGTTCTTTA
 ACAATCTTGC ATGACTTTTG GACTTTCTGC TTTTATGTCT TGCTTAAGTC TTCCTCACTC
 AAAGATCGAA TGTATTAG

  Submitted Frequency for ss85984325 back to top
There is no frequency submission for ss85984325.


  dbSNP summary of Genotypes for ss85984325 back to top
No sufficient data to compute Hardy-weinberg probability for ss85984325.


  Submitted individual genotype for ss85984325 back to top
There is no individual genotype data for ss85984325.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement