NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss86270412           
Submitter
HandleCORNELL
Submitter SNP IDhCV3041943
RefSNP(rs#)rs694214
Submitted Batch ID2007A
Submitted DateJan 21, 2008
Publication CitedN.D.
First entry to dbSNPJan 21 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize46
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86270412|allelePos=51|len=101|taxid=9606|alleles='G/T'|mol=Genomic
 CCCATCCTTT GCTTCCGCAG GTCCCACCCA CCTCTGCCTC CGCCATGGCT
 K
 CAAGAACCGT TATCATTGAC CACGGGTCTG GCTTTTTGAA GGCTGGCACG

  Submitted Frequency for ss86270412 back to top
There is no frequency submission for ss86270412.


  dbSNP summary of Genotypes for ss86270412 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AGI_ASP_population4646T=0.50000000G/G=0.39130434
T/T=0.39130434
G/T=0.21739130
Pr(chiSq=7.348,df=1)
=0.010
Genotype
Freq.

  Submitted individual genotype for ss86270412 back to top
There is no individual genotype data for ss86270412.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement