NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss86341857           
Submitter
HandleCANCER-GENOME
Submitter SNP ID20566
RefSNP(rs#)rs34417109
Submitted Batch ID3.0
Submitted DateJan 25, 2008
Publication Cited[1] A systematic screen of 3,544 candidate genes in clear cell carcinoma of the kidney
First entry to dbSNPJan 25 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPCRPRODUCTSEQUENCING1
Ascertainment Samplesize210
PopulationCANCER-GENOMEPopulation2
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86341857|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 GCTCACCCAG TTCCAGCCAT GCCCACCTAC CCCAGCCATC TCTCCATTGA CCAAACCTCG
 GAGATCCTGC AGCCTGGCCA ACTCCTTCTC TCTTCCAGGA GATCAGCTGG TTCCAGGAGT
 CCCAGGCCCC TCCTCTGAGG CAGAGGACGA CCCAGGAGAG GCGTTTGAGT TTGATGACAG
 TGATGATGAA GAGGACACCA
 R
 CGCAGCCCTG GGCGTCCCCA GCCTTGCTCC TGAGAGGGAC ACAGACCCCC CACTGATCCA
 CTTGGACTCC ATCCCTGTCA CTGGTAAGAT GTTTCTGGGA ACTTCCGGTC CTGGGGCTAC
 AGGGAGCATG GAGAACTGGG CGGAAGCTCC AGGCTCTCAG GGATGCCTGG TGGCCCCTCC
 GCTGTCCCCA GAAAGCAGGA

  Submitted Frequency for ss86341857 back to top
There is no frequency submission for ss86341857.


  dbSNP summary of Genotypes for ss86341857 back to top
No sufficient data to compute Hardy-weinberg probability for ss86341857.


  Submitted individual genotype for ss86341857 back to top
There is no individual genotype data for ss86341857.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement