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Submitted SNP(ss) Details: ss86342312           
Submitter
HandleCANCER-GENOME
Submitter SNP ID367
RefSNP(rs#)rs1805404
Submitted Batch ID3.0
Submitted DateJan 25, 2008
Publication Cited[1] A systematic screen of 3,544 candidate genes in clear cell carcinoma of the kidney
First entry to dbSNPJan 25 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPCRPRODUCTSEQUENCING1
Ascertainment Samplesize210
PopulationCANCER-GENOMEPopulation2
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86342312|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AGGAGGTGTT GCTGAAATAA CATGGGCACC ATACGCTTGA TCTGCACATG TGGGAGAGGG
 CAAGCTGGGG GAGGTTTGCT TTGCTCTCTG AGACGAGGCC CTCCTGGGAG CTTCAGGGTG
 GGGGCTGAAT GCCCATGCTG CCCCAGTATG TACACACCTG TCACTCCTCC AGCTTCCGCT
 GTCTTCTTGA CTTTCTGCTG
 R
 TCATCCCACC GAAGCTCAGA GAACCCATCC ACCTCAACGT CAGGGTGCCG GATGGAGTGG
 CCCACCTTCC AGAAGCAGGA GAAGTGGTAC CAGTGTGGGA CTTTTCCATC AAACATGGGC
 GACTAGAAGG AAGAGAAACA GAGGGAAGTA AGTAAGCAGT TAACTTTTGA CTTAGACCCA
 CTAGACCTTG ACCTTGACCT

  Submitted Frequency for ss86342312 back to top
There is no frequency submission for ss86342312.


  dbSNP summary of Genotypes for ss86342312 back to top
No sufficient data to compute Hardy-weinberg probability for ss86342312.


  Submitted individual genotype for ss86342312 back to top
There is no individual genotype data for ss86342312.