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Submitted SNP(ss) Details: ss87152804           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-2715328
RefSNP(rs#)rs12405900
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=G|Alt=A|Chr=chr1|Position=6434|Strand=+|dbSNP=+|Score=455|Reads=20:20:50

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss87152804|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 AAATGTGTTG CTGTAGTTTG TTATTAGACC CCTTCTTTCC ATTGGTTTAA TTAGGAATGG
 GGAACCCAGA GCCTCACTTG TTCAGGCTCC CTCTGCCCTA GAAGTGAGAA GTCCAGAGCT
 CTACAGTTTG AAAACCACTA TTTTATGAAC CAAGTAGAAC AAGATATTTG AAATGGAAAC
 TATTCAAAAA ATTGAGAATT TCTGACCACT TAACAAACCC ACAGAAAATC CACCCGAGTG
 CACTGAGCAC
 R
 CCAGAAATCA GGTGGCCTCA AAGAGCTGCT CCCACCTGAA GGAGACGCGC TGCTGCTGCT
 GTCGTCCTGC CTGGCGCCTT GGCCTACAGG GGCCGCGGTT GAGGGTGGGA GTGGGGGTGC
 ACTGGCCAGC ACCTCAGGAG CTGGGGGTGG TGGTGGGGGC GGTGGGGGTG GTGTTAGTAC
 CCCATCTTGT AGGTCTGAAA CACAAAGTGT GGGGTGTCTA GGGAAGAAGG TGTGTGACCA
 GGGAGGTCCC

  Submitted Frequency for ss87152804 back to top
There is no frequency submission for ss87152804.


  dbSNP summary of Genotypes for ss87152804 back to top
No sufficient data to compute Hardy-weinberg probability for ss87152804.


  Submitted individual genotype for ss87152804 back to top
There is no individual genotype data for ss87152804.