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Submitted SNP(ss) Details: ss87158582           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-0000562
RefSNP(rs#)rs6684820
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=G|Alt=A|Chr=chr1|Position=1114526|Strand=+|dbSNP=+|Score=234|Reads=10:10:10

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss87158582|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 TTAGCTCCGT GTGTGTGTGC ACTCTTCAAG ATTTTTATAT AAGGATCATG TCATCTGGAA
 TAGAAACAGC TTTACCTCTT CCTTTCAAAT TTATATGCAT TTTATTTCTT TTCTTACATA
 TTGCCGGCTA CTTCCAGAAC AATGTTGAAT AGAAGTAGCA AAAGCAGTCA TCCTTGTTTG
 TTCCTGATCT GAGGAGGAAG GCCGTGGGTT TCTCATAAAT GCCCTCGTCA GGTTGAGGAA
 GTTCCCTTCT
 R
 TTCCTAATTG GTTAAGTGTT TTTTGTTAAT ATCCTAGAAG GATGTTGAAA TCTGTCAAAT
 GCTTTTTCTG TCTCCACTGA GATGAGTGTG TCTTATTTCC CCTTCATTCT ATTAATGTGT
 TGTATCGCAC TGATTAACTT TCATATGACA AACCCCGCTT GATGATGGTA TAGAACCATT
 TAAATTTAAA TATGCTGTTG GATTTGGTTT GCTAATATTT TAATGAGGAT TTTTGTGTCT
 GTGCTTATAA

  Submitted Frequency for ss87158582 back to top
There is no frequency submission for ss87158582.


  dbSNP summary of Genotypes for ss87158582 back to top
No sufficient data to compute Hardy-weinberg probability for ss87158582.


  Submitted individual genotype for ss87158582 back to top
There is no individual genotype data for ss87158582.

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