NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss87174318           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-0002796
RefSNP(rs#)rs7416185
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=T|Alt=C|Chr=chr1|Position=3712602|Strand=+|dbSNP=+|Score=91|Reads=4:4:6

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss87174318|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 CCGGATGTAG GGACCAGCCC CACAGTGTTG GTGCGTTCTG CTCCCCATGT GCGGAGATGA
 GAGATTGTAG AAATAAAGAC ACAAGACAAA GAGATAAAAA GAAAAGACAG CTGGGCCTGG
 GGGACCACCA CCACCAAGAC GCGGAGACCG GTAGTGGCCC CGAATGCCTG GCTGCACTGT
 TATTTATTGG ATACAAACCA AAAGGGACAG GGTAAAGAGT GTGAGTCATC TCCAATGATA
 GGTAAGGTCA
 Y
 GTGGGTCACA TGTCCACTGG ACAGGGGGCC CTTTCCTGCC TGGCAGCCGA GGCAGAGAGA
 GAGGGGGAGA GAGAGAGAGA GACAGCTTAC GCCATTATTT CTGCTTATCA TAGACTTTTA
 GTACTTTCAC TAATTTGCTA CTGTTATCTA AAAGGCAAAG CCAGGTGTGC AGGATGGAAC
 ATGAAGGCGG ACTAGGAGCG TGACCACTGA AGCACAGCAT CACAGGGAGA CGGTTAGGCC
 TCCGGATAAC

  Submitted Frequency for ss87174318 back to top
There is no frequency submission for ss87174318.


  dbSNP summary of Genotypes for ss87174318 back to top
No sufficient data to compute Hardy-weinberg probability for ss87174318.


  Submitted individual genotype for ss87174318 back to top
There is no individual genotype data for ss87174318.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement